halophFGD

Basic Information

Locus ID: gene.Thate04g16600

Species & Taxonomic ID: Thalassia testudinum & 55497

Genome Assembly: GCA_037157565.1

Description: Belongs to the adaptor complexes medium subunit family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Chr04	298515659	298516692	+	gene.Thate04g16600

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.49	32,810.59 Da	49.63	106.74	0.28

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
MobiDBLite	mobidb-lite	consensus disorder prediction	278	307	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	265	307	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	199	229	-	-

KEGG Pathway

KO Term:

K10875 (DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-])

Pathway:

ko03440 (Homologous recombination) map03440 (Homologous recombination)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G57460.1
RefSeq	XP_031384934.1	uncharacterized protein LOC116198820 [Punica granatum]
TrEMBL	A0A843V764	MHD domain-containing protein OS=Colocasia esculenta OX=4460 GN=Taro_022184 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Hydrocharitaceae	Thalassia testudinum	14	gene.Thate02g30180, gene.Thate03g08470, gene.Thate04g16600 ... gene.Thate04g28040, gene.Thate04g28050, gene.Thate05g13670, gene.Thate05g17870, gene.Thate05g22830, gene.Thate05g27380, gene.Thate06g11940, gene.Thate06g11960, gene.Thate07g02280, gene.Thate08g24690, gene.Thate09g07300