Basic Information
Locus ID:
gene.Thate04g15940
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Belongs to the precorrin methyltransferase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 275836295 | 275839487 | - | gene.Thate04g15940 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.73 | 20,959.29 Da | 23.78 | 79.79 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00590 | Tetrapyrrole (Corrin/Porphyrin) Methylases | 90 | 133 | 5.4E-10 | IPR000878 |
| SUPERFAMILY | SSF53790 | Tetrapyrrole methylase | 89 | 138 | 4.84E-13 | IPR035996 |
| SUPERFAMILY | SSF53784 | Phosphofructokinase | 141 | 192 | 5.49E-9 | IPR035966 |
| Gene3D | G3DSA:3.40.50.450 | - | 141 | 192 | 1.6E-16 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
ko00860 (Porphyrin metabolism)
map00860 (Porphyrin metabolism)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
ko01120 (Microbial metabolism in diverse environments)
map01120 (Microbial metabolism in diverse environments)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G27460.2 | - | 0 |
| RefSeq | XP_023923701.1 | protein NPGR1 [Quercus suber] | 0 |
| Q9CB03 | Protein NPGR1 OS=Arabidopsis thaliana OX=3702 GN=NPGR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A4PEU7 | Putative tetratricopeptide-like helical domain-containing protein OS=Lupinus albus OX=3870 GN=Lalb_Chr14g0368211 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Hydrocharitaceae | Thalassia testudinum | 12 | gene.Thate01g20700, gene.Thate02g25440, gene.Thate03g17220 ... |
| Poaceae | Zea mays | 1 | Zm00001eb067120_P001 |