Basic Information
Locus ID:
gene.Thate04g13150
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Short Name:
UBP16
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 185626340 | 185710073 | - | gene.Thate04g13150 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.72 | 107,387.70 Da | 50.00 | 67.61 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 460 | 764 | 6.57621E-135 | - |
| Pfam | PF01753 | MYND finger | 96 | 133 | 1.9E-9 | IPR002893 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 461 | 763 | 3.4E-45 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 457 | 770 | 2.16E-85 | IPR038765 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 93 | 137 | 4.01E-11 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 83 | 138 | 1.8E-12 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 454 | 775 | 2.8E-91 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 461 | 766 | 51.275787 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 96 | 133 | 11.360689 | IPR002893 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 96 | 133 | - | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 462 | 477 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 825 | 859 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 895 | 916 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 206 | 231 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 153 | 168 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 206 | 222 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 136 | 168 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 827 | 859 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 895 | 913 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 950 | 980 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 945 | 980 | - | - |
| Coils | Coil | Coil | 37 | 60 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24560.1 | ubiquitin-specific protease 16. Encodes a ubiquitin-specific protease. There is no evidence for a phenotype in ubp16-1 mutants, however, double mutant analysis with ubp15 mutants reveals a role for UBP16 in plant development and cell proliferation. | 0 |
| RefSeq | XP_010916668.1 | ubiquitin carboxyl-terminal hydrolase 17 isoform X2 [Elaeis guineensis] | 0 |
| Q9SB51 | Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana OX=3702 GN=UBP16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0N1Q0 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Cocos nucifera OX=13894 GN=COCNU_05G005120 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology