Basic Information
Locus ID:
gene.Thate04g13140
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 185607923 | 185613200 | + | gene.Thate04g13140 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.48 | 35,597.53 Da | 74.19 | 82.45 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF52047 | RNI-like | 80 | 279 | 3.34E-13 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 50 | 99 | 3.3E-8 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 100 | 226 | 1.5E-5 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 227 | 303 | 9.5E-7 | IPR032675 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G05460.1 | RNI-like superfamily protein. | 0 |
| RefSeq | XP_010261892.1 | PREDICTED: F-box protein FBW2-like [Nelumbo nucifera] | 0 |
| Q9M0U9 | F-box protein SKIP19 OS=Arabidopsis thaliana OX=3702 GN=SKIP19 PE=1 SV=1 | 0 | |
| TrEMBL | A0A804JXR4 | F-box domain-containing protein OS=Musa acuminata subsp. malaccensis OX=214687 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg31109, jg39527 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_23334, gene_23726 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah023833, Ah027351 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_1g008680, BVRB_6g134840 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg13780, Sbi_jg29353, Sbi_jg3581, Sbi_jg52136 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg6374, Seu_jg9701 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00000842, GOSA_00010293 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl11808, Sgl11969, Sgl17298, Sgl33818, Sgl39182 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000000262, gene:ENSEOMG00000002343 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1AG0011540, CQ.Regalona.r1.1BG0014430 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30041090, pistato.v30041200 |
| Apiaceae | Apium graveolens | 4 | Ag1G00233, Ag2G00586, Ag3G01012, Ag7G01457 |
| Arecaceae | Cocos nucifera | 3 | COCNU_05G006120, COCNU_13G003230, scaffold001727G000010 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103696253, gene-LOC103707947, gene-LOC103713372 ... |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.207.V1.1, AsparagusV1_06.1768.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G16149, Ftri11G02826 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G08980.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10028810m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g08650.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB08g034940.2N, BniB08g053680.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1319 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G1421 |
| Cymodoceaceae | Cymodocea nodosa | 4 | gene.Cymno01g09790, gene.Cymno01g09800, gene.Cymno04g09650 ... |
| Hydrocharitaceae | Thalassia testudinum | 4 | gene.Thate03g06110, gene.Thate04g13130, gene.Thate04g13140 ... |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-10162, nbisL1-mrna-10631, nbisL1-mrna-8769 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.1080 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00020980 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G15384 |
| Poaceae | Echinochloa crus-galli | 6 | AH07.3538, AH09.1155, BH07.3357, BH09.1258, CH07.3424 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2AG0146380, gene-QOZ80_2BG0201890 ... |
| Poaceae | Hordeum vulgare | 7 | HORVU.MOREX.r3.2HG0171920.1, HORVU.MOREX.r3.3HG0321670.1 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_025500, gene-QYE76_028738, gene-QYE76_044312 |
| Poaceae | Oryza coarctata | 6 | Oco03G022140, Oco04G022770, Oco07G007050, Oco08G006970 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os02g52130.5, LOC_Os04g37590.1, LOC_Os06g11630.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G284800, gene-BS78_06G113700 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0302565, Pt_Chr0404848, Pt_Chr0404912, Pt_Chr0601106 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr06G001780, Chr09G019500, Chr13G003710, Chr15G003150 |
| Poaceae | Thinopyrum elongatum | 5 | Tel2E01G555000, Tel3E01G800700, Tel3E01G801800 ... |
| Poaceae | Triticum dicoccoides | 9 | gene_TRIDC2AG046050, gene_TRIDC2BG049000 ... |
| Poaceae | Triticum aestivum | 11 | TraesCS2A02G316800.1, TraesCS2B02G334900.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb132330_P001, Zm00001eb193970_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-21769, nbis-gene-37732, nbis-gene-8643 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g14473, Zma_g17187, Zma_g19786 |
| Portulacaceae | Portulaca oleracea | 14 | evm.TU.LG03.1931, evm.TU.LG04.1806, evm.TU.LG04.1807 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g22860 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_7_RagTag.980, evm.TU.Scaffold_8_RagTag.757 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-18984, nbisL1-mrna-9487 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-11983, nbisL1-mrna-17438 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-20487, nbisL1-mrna-6810 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000002l.746, evm.TU.utg000018l.513 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003285 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-2993, nbisL1-mrna-8224 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-20307, nbisL1-mrna-9966 |
| Salicaceae | Populus euphratica | 4 | populus_peu14589, populus_peu14591, populus_peu32245 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132613532, gene-LOC132640521, gene-LOC132644834 |
| Solanaceae | Solanum chilense | 2 | SOLCI002664500, SOLCI006159000 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107005006, gene-LOC107008531 |
| Tamaricaceae | Reaumuria soongarica | 3 | STRG.10074_chr06_-, STRG.16581_chr06_+, STRG.26408_chr11_- |
| Tamaricaceae | Tamarix chinensis | 2 | TC03G1601, TC09G0040 |
| Zosteraceae | Zostera marina | 2 | Zosma03g18830.v3.1, Zosma05g30140.v3.1 |