Basic Information
Locus ID:
gene.Thate04g11690
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 146244184 | 146245224 | + | gene.Thate04g11690 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.57 | 37,927.13 Da | 81.72 | 78.35 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 112 | 155 | 1.99472E-14 | - |
| Pfam | PF13639 | Ring finger domain | 112 | 155 | 7.9E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 90 | 161 | 5.3E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 71 | 161 | 8.8E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 113 | 154 | 8.9E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 113 | 155 | 12.223724 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 169 | 227 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05810.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_039145775.1 | RING-H2 finger protein ATL43 [Dioscorea cayenensis subsp. rotundata] | 0 |
| Q5EAE9 | RING-H2 finger protein ATL43 OS=Arabidopsis thaliana OX=3702 GN=ATL43 PE=2 SV=2 | 0 | |
| TrEMBL | A0A444FG98 | RING-type domain-containing protein OS=Ensete ventricosum OX=4639 GN=GW17_00014181 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology