Basic Information
Locus ID:
gene.Thate04g10860
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 109987162 | 110035086 | - | gene.Thate04g10860 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.08 | 93,580.54 Da | 50.10 | 72.64 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 185 | 490 | 1.15937E-156 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 186 | 489 | 1.4E-42 | IPR001394 |
| Pfam | PF01753 | MYND finger | 96 | 133 | 5.4E-10 | IPR002893 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 94 | 135 | 3.66E-11 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 184 | 495 | 1.84E-84 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 180 | 497 | 1.5E-88 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 90 | 139 | 2.5E-13 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 186 | 492 | 48.901089 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 96 | 133 | 12.060699 | IPR002893 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 96 | 133 | - | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 187 | 202 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 636 | 696 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 503 | 540 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 668 | 683 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 64 | 87 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 503 | 542 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 583 | 601 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 573 | 620 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 602 | 616 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G24640.1 | ubiquitin-specific protease 19. | 0 |
| RefSeq | XP_010928622.1 | ubiquitin carboxyl-terminal hydrolase 18 [Elaeis guineensis] | 0 |
| Q9SJA1 | Ubiquitin carboxyl-terminal hydrolase 19 OS=Arabidopsis thaliana OX=3702 GN=UBP19 PE=2 SV=2 | 0 | |
| TrEMBL | A0A843VVU2 | USP domain-containing protein OS=Colocasia esculenta OX=4460 GN=Taro_028976 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology