Basic Information
Locus ID:
gene.Thate04g10510
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
DNA repair protein RAD23-1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 100336663 | 100350904 | - | gene.Thate04g10510 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.03 | 42,062.95 Da | 47.52 | 79.41 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 1.036E-29 | - |
| CDD | cd14379 | UBA1_Rad23_plant | 142 | 191 | 1.12261E-29 | - |
| Pfam | PF00627 | UBA/TS-N domain | 149 | 186 | 1.2E-14 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 254 | 309 | 1.8E-22 | IPR015360 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 2.9E-16 | IPR000626 |
| SUPERFAMILY | SSF46934 | UBA-like | 318 | 355 | 7.81E-5 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 90 | 1.55E-21 | IPR029071 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 251 | 316 | 6.54E-22 | IPR036353 |
| SUPERFAMILY | SSF46934 | UBA-like | 126 | 192 | 1.85E-12 | IPR009060 |
| Gene3D | G3DSA:1.10.8.10 | - | 326 | 357 | 1.3E-7 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 245 | 310 | 2.3E-26 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 141 | 191 | 4.4E-21 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 77 | 6.2E-26 | - |
| SMART | SM00165 | uba_6 | 335 | 371 | 54.0 | IPR015940 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 3.2E-20 | IPR000626 |
| SMART | SM00727 | CBM | 250 | 295 | 3.5E-5 | IPR006636 |
| SMART | SM00165 | uba_6 | 148 | 188 | 5.7E-6 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 355 | 1.7E-109 | IPR004806 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 76 | 18.061903 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 146 | 189 | 13.028836 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 346 | 360 | 1.3E-16 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 329 | 345 | 1.3E-16 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 280 | 302 | 1.3E-16 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 134 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 205 | 225 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 110 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79650.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_020103402.1 | ubiquitin receptor RAD23b-like isoform X1 [Ananas comosus] | 0 |
| Q84L33 | Ubiquitin receptor RAD23b OS=Arabidopsis thaliana OX=3702 GN=RAD23B PE=1 SV=3 | 0 | |
| TrEMBL | A0A6P5GBY7 | Ubiquitin receptor RAD23 OS=Ananas comosus OX=4615 GN=LOC109720585 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology