Basic Information
Locus ID:
gene.Thate04g09140
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
PB1 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 73710908 | 73740509 | - | gene.Thate04g09140 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.60 | 130,178.62 Da | 52.17 | 79.28 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13999 | STKc_MAP3K-like | 924 | 1181 | 2.06226E-103 | - |
| CDD | cd06410 | PB1_UP2 | 12 | 114 | 5.18059E-42 | - |
| Pfam | PF00564 | PB1 domain | 28 | 115 | 2.3E-16 | IPR000270 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 920 | 1180 | 5.1E-60 | IPR001245 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 25 | 120 | 1.06E-19 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 911 | 1179 | 1.8E-73 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 912 | 1005 | 6.8E-23 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1006 | 1203 | 4.0E-52 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 30 | 115 | 2.6E-10 | - |
| SMART | SM00666 | PB1_new | 23 | 116 | 7.4E-27 | IPR000270 |
| SMART | SM00220 | serkin_6 | 918 | 1184 | 4.3E-55 | IPR000719 |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 8 | 116 | 12.294687 | IPR000270 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 918 | 1183 | 39.69323 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 924 | 955 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1043 | 1055 | - | IPR008271 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1000 | 1013 | 6.4E-14 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1152 | 1174 | 6.4E-14 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1108 | 1130 | 6.4E-14 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1037 | 1055 | 6.4E-14 | IPR001245 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 152 | 187 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 147 | 187 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 759 | 783 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46920.1 | Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain. | 0 |
| RefSeq | XP_039116612.1 | uncharacterized protein LOC120252506 isoform X1 [Dioscorea cayenensis subsp. rotundata] | 0 |
| A0A2R6XIK6 | RAF-like serine/threonine-protein kinase PRAF OS=Marchantia polymorpha OX=3197 GN=PRAF PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B9AH31 | uncharacterized protein LOC120110830 isoform X1 OS=Phoenix dactylifera OX=42345 GN=LOC120110830 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg31584 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_10572 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014190 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_8g189770, BVRB_8g192730 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011096 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl41857, Sgl46659 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009375, gene:ENSEOMG00000030482 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0023300, CQ.Regalona.r1.8BG0019070 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30179690 |
| Apiaceae | Apium graveolens | 6 | Ag11G04251, Ag2G02869, Ag3G02723, Ag4G01359, Ag4G02866 ... |
| Arecaceae | Cocos nucifera | 3 | COCNU_01G005630, COCNU_01G010200, COCNU_11G008220 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103703666, gene-LOC103706458, gene-LOC103715979 ... |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_01.94.V1.1, AsparagusV1_05.3319.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G11468 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G46920.1 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2493 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2630 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno01g06700, gene.Cymno02g05410 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g09140 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.120 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00000991 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G03774, Lb3G20127, Lb7G35244 |
| Poaceae | Echinochloa crus-galli | 6 | AH06.2451, AH06.540, BH06.2249, BH06.587, CH06.2475 ... |
| Poaceae | Eleusine coracana subsp. coracana | 7 | gene-QOZ80_6AG0511090, gene-QOZ80_6AG0546370 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.7HG0658560.1, HORVU.MOREX.r3.7HG0744210.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_028258, gene-QYE76_036653 |
| Poaceae | Oryza coarctata | 4 | Oco11G003700, Oco11G013840, Oco12G003700, Oco12G014030 |
| Poaceae | Oryza sativa | 2 | LOC_Os06g08280.1, LOC_Os06g43840.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_10G063900, gene-BS78_10G207400 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0207123, Pt_Chr0401563, Pt_Chr0405273, Pt_Ctg00035 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr02G030890, Chr05G008600, Chr0G000080, Chr10G019000 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel7E01G295500, Tel7E01G881100 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC7AG017680, gene_TRIDC7AG071830 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS7A02G145100.1, TraesCS7A02G511900.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb268080_P004, Zm00001eb374870_P002 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-40901, nbis-gene-5019 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g29222, Zma_g33143 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.1104, evm.TU.LG05.1648 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g23910, gene.Posoc03g12130 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_10_RagTag.114, evm.TU.Scaffold_4_RagTag.2226 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-25248 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-13162, nbisL1-mrna-21292 |
| Rhizophoraceae | Ceriops zippeliana | 4 | nbisL1-mrna-16550, nbisL1-mrna-16551, nbisL1-mrna-16552 ... |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.1308 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000803 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-1875, nbisL1-mrna-23539 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22261 |
| Salicaceae | Populus euphratica | 3 | populus_peu05652, populus_peu05653, populus_peu12286 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132603070 |
| Solanaceae | Solanum chilense | 1 | SOLCI007338600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026002 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8132 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G1133 |
| Zosteraceae | Zostera marina | 1 | Zosma03g01840.v3.1 |