Basic Information
Locus ID:
gene.Thate04g07910
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
In Between Ring fingers
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 59152537 | 59153670 | - | gene.Thate04g07910 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.37 | 42,182.28 Da | 44.90 | 87.69 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 244 | 300 | 1.8E-8 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 321 | 360 | 6.6E-6 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 319 | 370 | 5.98E-12 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 252 | 306 | 1.56E-6 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 163 | 241 | 1.41E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 161 | 244 | 5.9E-9 | IPR013083 |
| Gene3D | G3DSA:1.20.120.1750 | - | 298 | 376 | 1.3E-13 | - |
| SMART | SM00647 | ibrneu5 | 304 | 365 | 0.22 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 235 | 300 | 1.7E-6 | IPR002867 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 164 | 372 | 28.194426 | IPR044066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 168 | 210 | 8.71251 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 184 | 193 | - | IPR017907 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G01020.1 | helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_021300704.1 | ATP-dependent RNA helicase DEAH11, chloroplastic-like [Herrania umbratica] | 0 |
| P0CE10 | ATP-dependent RNA helicase DEAH11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g01020 PE=3 SV=1 | 0 | |
| TrEMBL | A0A1U8KCS1 | ATP-dependent RNA helicase DEAH11, chloroplastic-like OS=Gossypium hirsutum OX=3635 GN=LOC107914369 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000003636, gene:ENSEOMG00000025916 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103717971 |
| Brassicaceae | Brassica nigra | 1 | BniB01g033480.2N |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g07910 |