Basic Information
Locus ID:
gene.Thate04g06540
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Belongs to the FPP GGPP synthase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 44677384 | 44679625 | + | gene.Thate04g06540 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.95 | 36,423.46 Da | 49.41 | 95.65 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00685 | Trans_IPPS_HT | 68 | 338 | 1.67677E-92 | IPR000092 |
| Pfam | PF00348 | Polyprenyl synthetase | 72 | 306 | 1.4E-56 | IPR000092 |
| SUPERFAMILY | SSF48576 | Terpenoid synthases | 50 | 322 | 3.12E-88 | IPR008949 |
| Gene3D | G3DSA:1.10.600.10 | Farnesyl Diphosphate Synthase | 42 | 340 | 2.4E-108 | IPR008949 |
| ProSitePatterns | PS00723 | Polyprenyl synthases signature 1. | 122 | 138 | - | IPR033749 |
| ProSitePatterns | PS00444 | Polyprenyl synthases signature 2. | 258 | 270 | - | IPR033749 |
| SFLD | SFLDS00005 | Isoprenoid Synthase Type I | 50 | 338 | 0.0 | - |
| SFLD | SFLDG01017 | Polyprenyl Transferase Like | 50 | 338 | 0.0 | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Module:
Reaction:
R01658 (Dimethylallyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + Geranyl diphosphate)
R02003 (Geranyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + trans,trans-Farnesyl diphosphate)
R02061 (trans,trans-Farnesyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + Geranylgeranyl diphosphate)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36810.1 | geranylgeranyl pyrophosphate synthase 1. Encodes a protein with geranylgeranyl pyrophosphate synthase activity involved in isoprenoid biosynthesis. The enzyme appears to be targeted to the chloroplast in epidermal cells and guard cells of leaves, and in etioplasts in roots. | 0 |
| RefSeq | XP_020873013.1 | heterodimeric geranylgeranyl pyrophosphate synthase large subunit 1, chloroplastic [Arabidopsis lyrata subsp. lyrata] | 0 |
| P34802 | Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=GGPPS1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9NLB2 | Heterodimeric geranyl(Geranyl) pyrophosphate synthase large subunit 1, chloroplastic OS=Zostera marina OX=29655 GN=ZOSMA_86G00380 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology