halophFGD

Basic Information

Locus ID: gene.Thate04g05840

Species & Taxonomic ID: Thalassia testudinum & 55497

Genome Assembly: GCA_037157565.1

Description: RING-like zinc finger

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Chr04	37168131	37168787	+	gene.Thate04g05840

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
4.61	23,717.28 Da	67.09	65.32	-0.55

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF13639	Ring finger domain	152	182	1.3E-9	IPR001841
SUPERFAMILY	SSF57850	RING/U-box	110	187	6.52E-15	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	103	199	1.7E-17	IPR013083
SMART	SM00184	ring_2	117	181	9.3E-9	IPR001841
ProSiteProfiles	PS50089	Zinc finger RING-type profile.	117	182	11.677863	IPR001841
MobiDBLite	mobidb-lite	consensus disorder prediction	187	211	-	-
Coils	Coil	Coil	121	141	-	-

KEGG Pathway

KO Term:

K11982 (E3 ubiquitin-protein ligase RNF115/126 [EC:2.3.2.27])

Best hit

Source	Best Hit ID	Description
TAIR	AT3G02340.1	RING/U-box superfamily protein.
RefSeq	XP_010939805.3	E3 ubiquitin-protein ligase MPSR1 [Elaeis guineensis]
Swiss-Prot	Q8LPN7	E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1
TrEMBL	A0A843XRH7	RING-type domain-containing protein OS=Colocasia esculenta OX=4460 GN=Taro_054777 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	9	jg11035, jg17884, jg34777, jg40256, jg5431, jg5432, jg7093 ... jg9335, jg9520
Aizoaceae	Mesembryanthemum crystallinum	3	gene_18252, gene_18932, gene_19258
Amaranthaceae	Atriplex hortensis	8	Ah013047, Ah013261, Ah025524, Ah025526, Ah035872, Ah035873 ... Ah035876, Ah035877
Amaranthaceae	Beta vulgaris	3	BVRB_5g121930, BVRB_6g136140, BVRB_9g213870
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg31312, Sbi_jg42229, Sbi_jg44780, Sbi_jg57966
Amaranthaceae	Salicornia europaea	3	Seu_jg25594, Seu_jg27303, Seu_jg7212
Amaranthaceae	Suaeda aralocaspica	5	GOSA_00000812, GOSA_00002142, GOSA_00004484, GOSA_00004707 ... GOSA_00014242
Amaranthaceae	Suaeda glauca	6	Sgl34055, Sgl35616, Sgl39441, Sgl40953, Sgl54541, Sgl59882
Amaranthaceae	Chenopodium album	16	gene:ENSEOMG00000002387, gene:ENSEOMG00000011847 ... gene:ENSEOMG00000016774, gene:ENSEOMG00000018233, gene:ENSEOMG00000020153, gene:ENSEOMG00000021152, gene:ENSEOMG00000021592, gene:ENSEOMG00000022477, gene:ENSEOMG00000025465, gene:ENSEOMG00000025778, gene:ENSEOMG00000028837, gene:ENSEOMG00000033051, gene:ENSEOMG00000035450, gene:ENSEOMG00000046702, gene:ENSEOMG00000048976, gene:ENSEOMG00000049316
Amaranthaceae	Chenopodium quinoa	15	CQ.Regalona.r1.1AG0023170, CQ.Regalona.r1.1AG0023180 ... CQ.Regalona.r1.1BG0001030, CQ.Regalona.r1.5AG0027080, CQ.Regalona.r1.5BG0028700, CQ.Regalona.r1.6AG0000960, CQ.Regalona.r1.6AG0013360, CQ.Regalona.r1.6BG0000980, CQ.Regalona.r1.6BG0014140, CQ.Regalona.r1.6BG0014150, CQ.Regalona.r1.6BG0014170, CQ.Regalona.r1.6BG0014180, CQ.Regalona.r1.6BG0014190, CQ.Regalona.r1.6BG0014200, CQ.Regalona.r1.8AG0016270
Anacardiaceae	Pistacia vera	14	pistato.v30037150, pistato.v30037160, pistato.v30039220 ... pistato.v30039230, pistato.v30039240, pistato.v30039720, pistato.v30137450, pistato.v30137460, pistato.v30137470, pistato.v30137480, pistato.v30137630, pistato.v30146290, pistato.v30146300, pistato.v30191670
Apiaceae	Apium graveolens	3	Ag1G01411, Ag2G00681, Ag6G00398
Arecaceae	Cocos nucifera	17	COCNU_01G015410, COCNU_01G015430, COCNU_01G015440 ... COCNU_01G016310, COCNU_01G016320, COCNU_04G007800, COCNU_05G007510, COCNU_13G002120, COCNU_14G004440, COCNU_14G004480, COCNU_16G001290, COCNU_16G001300, COCNU_16G001580, COCNU_16G001590, contig69279686G000010, scaffold009444G000050, scaffold020155G000010
Arecaceae	Phoenix dactylifera	19	gene-LOC103696698, gene-LOC103705754, gene-LOC103716391 ... gene-LOC103718975, gene-LOC103722115, gene-LOC120105358, gene-LOC120105360, gene-LOC120109885, gene-LOC120110084, gene-LOC120110626, gene-LOC120110994, gene-LOC120111161, gene-LOC120111558, gene-LOC120112525, gene-LOC120112526, gene-LOC120112528, gene-LOC120112530, gene-LOC120112531, gene-LOC120112568
Asparagaceae	Asparagus officinalis	1	AsparagusV1_04.2014.V1.1
Asteraceae	Flaveria trinervia	2	Ftri13G05331, Ftri9G30315
Brassicaceae	Arabidopsis thaliana	5	AT1G14200.1, AT1G18770.1, AT1G18780.1, AT1G26800.1 ... AT2G29840.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10009491m.g.v1.0, Thhalv10009557m.g.v1.0 ... Thhalv10009887m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp1g12540.v2.2, Sp1g21990.v2.2
Brassicaceae	Brassica nigra	6	BniB02g009280.2N, BniB03g018840.2N, BniB03g029300.2N ... BniB03g031510.2N, BniB06g039220.2N, BniB06g059710.2N
Casuarinaceae	Casuarina equisetifolia	6	Ceq04G1388, Ceq04G1389, Ceq04G1392, Ceq04G1393, Ceq07G0125 ... Ceq08G0292
Casuarinaceae	Casuarina glauca	7	Cgl04G1523, Cgl04G1544, Cgl04G1554, Cgl04G1555, Cgl07G0113 ... Cgl08G0237, Cgl09G0390
Cymodoceaceae	Cymodocea nodosa	8	gene.Cymno01g08060, gene.Cymno01g08070, gene.Cymno04g06250 ... gene.Cymno04g06290, gene.Cymno04g10210, gene.Cymno05g11220, gene.Cymno06g11010, gene.Cymno11g07490
Hydrocharitaceae	Thalassia testudinum	4	gene.Thate01g08560, gene.Thate04g05840, gene.Thate07g18590 ... gene.Thate07g18600
Malvaceae	Hibiscus hamabo Siebold & Zucc.	9	nbisL1-mrna-10781, nbisL1-mrna-11183, nbisL1-mrna-11714 ... nbisL1-mrna-2220, nbisL1-mrna-2221, nbisL1-mrna-2524, nbisL1-mrna-4088, nbisL1-mrna-5106, nbisL1-mrna-9756
Nitrariaceae	Nitraria sibirica	5	evm.TU.LG03.1031, evm.TU.LG03.262, evm.TU.LG04.1516 ... evm.TU.LG05.438, evm.TU.LG10.909
Plantaginaceae	Plantago ovata	26	Pov_00005686, Pov_00005788, Pov_00005854, Pov_00012160 ... Pov_00012179, Pov_00013167, Pov_00013323, Pov_00013338, Pov_00013352, Pov_00014579, Pov_00022400, Pov_00022847, Pov_00025928, Pov_00026889, Pov_00026891, Pov_00026962, Pov_00027002, Pov_00027029, Pov_00027138, Pov_00027211, Pov_00027475, Pov_00028862, Pov_00028864, Pov_00032343, Pov_00036555, Pov_00041110
Plumbaginaceae	Limonium bicolor	2	Lb2G08481, Lb4G23713
Poaceae	Echinochloa crus-galli	39	AH01.1201, AH01.3074, AH03.3349, AH03.3796, AH04.241 ... AH04.242, AH04.243, AH04.282, AH04.284, AH05.160, AH05.363, AH08.1864, BH02.3768, BH02.3769, BH03.4080, BH04.245, BH04.269, BH04.271, BH05.185, BH05.221, BH05.229, BH05.2756, BH08.1947, CH01.1447, CH01.1448, CH03.4327, CH03.4359, CH04.2208, CH04.2210, CH04.264, CH04.272, CH04.288, CH05.243, CH05.2814, CH05.282, CH05.3059, CH06.2434, CH07.870, CH09.2697
Poaceae	Eleusine coracana subsp. coracana	15	gene-QOZ80_5AG0379980, gene-QOZ80_5AG0380410 ... gene-QOZ80_5AG0381080, gene-QOZ80_5BG0427950, gene-QOZ80_5BG0428440, gene-QOZ80_7AG0578480, gene-QOZ80_7BG0609740, gene-QOZ80_9AG0674160, gene-QOZ80_9AG0674180, gene-QOZ80_9AG0674260, gene-QOZ80_9AG0674320, gene-QOZ80_9BG0697020, gene-QOZ80_9BG0697890, gene-QOZ80_9BG0697920, gene-QOZ80_9BG0697990
Poaceae	Hordeum vulgare	10	HORVU.MOREX.r3.1HG0022400.1.CDS1 ... HORVU.MOREX.r3.1HG0022430.1, HORVU.MOREX.r3.2HG0122190.1.CDS1, HORVU.MOREX.r3.2HG0208160.1.CDS1, HORVU.MOREX.r3.3HG0315130.1.CDS1, HORVU.MOREX.r3.4HG0356020.1.CDS1, HORVU.MOREX.r3.4HG0356080.1.CDS1, HORVU.MOREX.r3.4HG0415900.1.CDS1, HORVU.MOREX.r3.5HG0429660.1.CDS1, HORVU.MOREX.r3.6HG0565790.1.CDS1
Poaceae	Lolium multiflorum	26	gene-QYE76_001876, gene-QYE76_001878, gene-QYE76_003017 ... gene-QYE76_003022, gene-QYE76_003133, gene-QYE76_003170, gene-QYE76_003171, gene-QYE76_003176, gene-QYE76_003182, gene-QYE76_003231, gene-QYE76_003282, gene-QYE76_003585, gene-QYE76_003586, gene-QYE76_003587, gene-QYE76_016475, gene-QYE76_016477, gene-QYE76_039627, gene-QYE76_060234, gene-QYE76_060239, gene-QYE76_065305, gene-QYE76_065307, gene-QYE76_065310, gene-QYE76_065311, gene-QYE76_065313, gene-QYE76_070822, gene-QYE76_070823
Poaceae	Oryza coarctata	8	Oco05G014670, Oco13G013480, Oco21G000600, Oco21G000920 ... Oco21G001120, Oco22G001790, Oco23G001380, Oco24G001040
Poaceae	Oryza sativa	13	LOC_Os03g26300.1, LOC_Os03g26370.1, LOC_Os03g26420.1 ... LOC_Os07g43740.1, LOC_Os11g04280.1, LOC_Os11g04281.1, LOC_Os11g04680.1, LOC_Os12g04090.1, LOC_Os12g04450.1, LOC_Os12g04590.1, LOC_Os12g04650.3, LOC_Os12g04660.1, LOC_Os12g05270.1
Poaceae	Paspalum vaginatum	24	gene-BS78_01G441000, gene-BS78_01G444300, gene-BS78_K062800 ... gene-BS78_01G475600, gene-BS78_01G499200, gene-BS78_02G360700, gene-BS78_05G002300, gene-BS78_05G023100, gene-BS78_05G024000, gene-BS78_05G039700, gene-BS78_05G040500, gene-BS78_05G041100, gene-BS78_05G041500, gene-BS78_05G044300, gene-BS78_05G048200, gene-BS78_05G094600, gene-BS78_06G026200, gene-BS78_08G023000, gene-BS78_08G023100, gene-BS78_08G023200, gene-BS78_10G278400, gene-BS78_10G278800, gene-BS78_10G279400, gene-BS78_K062900
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0106258, Pt_Chr0703129, Pt_Chr0703133, Pt_Chr0703179
Poaceae	Sporobolus alterniflorus	14	Chr04G002010, Chr06G023040, Chr07G015010, Chr07G021860 ... Chr16G009180, Chr16G009390, Chr17G008200, Chr17G008430, Chr19G001680, Chr19G012010, Chr24G014510, Chr27G015580, Chr31G000550, Chr31G007760
Poaceae	Thinopyrum elongatum	5	Tel1E01G187900, Tel2E01G310500, Tel4E01G206000 ... Tel4E01G206200, Tel4E01G603000
Poaceae	Triticum dicoccoides	11	gene_TRIDC1AG012970, gene_TRIDC1BG017220 ... gene_TRIDC2AG019640, gene_TRIDC2BG023640, gene_TRIDC3AG065730, gene_TRIDC3BG074480, gene_TRIDC5AG014820, gene_TRIDC5BG014710, gene_TRIDC5BG014740, gene_TRIDC6AG018340, gene_TRIDC6BG024250
Poaceae	Triticum aestivum	30	TraesCS1A02G090900.1.cds1, TraesCS1B02G118700.1.cds1 ... TraesCS1B02G118800.1.cds1, TraesCS1D02G099500.1.cds1, TraesCS2A02G156800.2.cds1, TraesCS2B02G182300.1.cds1, TraesCS2B02G566600.1.cds1, TraesCS2B02G566700.1.cds1, TraesCS2D02G162600.1.cds1, TraesCS2D02G522200.1.cds1, TraesCS2D02G537500.1.cds1, TraesCS3A02G464800.1, TraesCS3B02G509100.1, TraesCS3D02G459900.1.cds1, TraesCS4A02G185500.1.cds1, TraesCS4A02G185700.1.cds1, TraesCS4A02G185800.1.cds1, TraesCS4D02G127900.1.cds1, TraesCS4D02G128100.1.cds1, TraesCS4D02G362000.1.cds1, TraesCS5A02G045900.1.cds1, TraesCS5A02G097000.1.cds1, TraesCS5B02G049900.1.cds1, TraesCS5B02G090000.1.cds1, TraesCS5B02G090100.1.cds1, TraesCS5D02G055800.1.cds1, TraesCS5D02G096000.1.cds1, TraesCS5D02G096500.1.cds1, TraesCS5D02G096600.1.cds1, TraesCS6B02G164200.1.cds1
Poaceae	Zea mays	2	Zm00001eb015480_P001, Zm00001eb110240_P001
Poaceae	Zoysia japonica	3	nbis-gene-23420, nbis-gene-33044, nbis-gene-40147
Poaceae	Zoysia macrostachya	3	Zma_g17546, Zma_g18166, Zma_g5620
Portulacaceae	Portulaca oleracea	5	evm.TU.LG03.235, evm.TU.LG09.712, evm.TU.LG12.1469 ... evm.TU.LG13.400, evm.TU.LG21.101
Posidoniaceae	Posidonia oceanica	4	gene.Posoc01g11400, gene.Posoc01g11420, gene.Posoc03g09670 ... gene.Posoc07g03620
Rhizophoraceae	Bruguiera sexangula	7	evm.TU.Scaffold_11_RagTag.918, evm.TU.Scaffold_11_RagTag.919 ... evm.TU.Scaffold_17_RagTag.324, evm.TU.Scaffold_17_RagTag.927, evm.TU.Scaffold_3_RagTag.1764, evm.TU.Scaffold_4_RagTag.561, evm.TU.Scaffold_6_RagTag.284
Rhizophoraceae	Carallia pectinifolia	9	nbisL1-mrna-14595, nbisL1-mrna-14596, nbisL1-mrna-15141 ... nbisL1-mrna-2222, nbisL1-mrna-22951, nbisL1-mrna-23000, nbisL1-mrna-26792, nbisL1-mrna-3108, nbisL1-mrna-9305
Rhizophoraceae	Ceriops tagal	7	nbisL1-mrna-10541, nbisL1-mrna-11321, nbisL1-mrna-15571 ... nbisL1-mrna-20339, nbisL1-mrna-20340, nbisL1-mrna-325, nbisL1-mrna-4808
Rhizophoraceae	Ceriops zippeliana	7	nbisL1-mrna-12494, nbisL1-mrna-12495, nbisL1-mrna-14848 ... nbisL1-mrna-15723, nbisL1-mrna-15757, nbisL1-mrna-1781, nbisL1-mrna-2958
Rhizophoraceae	Kandelia candel	10	add.evm.TU.utg000001l.189, add.evm.TU.utg000001l.201 ... add.evm.TU.utg000008l.131, add.evm.TU.utg000010l.24, add.evm.TU.utg000010l.25, add.evm.TU.utg000013l.195, add.evm.TU.utg000013l.71, add.evm.TU.utg000013l.80, add.evm.TU.utg000019l.67, add.evm.TU.utg000022l.217
Rhizophoraceae	Kandelia obovata	2	Maker00001663, Maker00006603
Rhizophoraceae	Rhizophora apiculata	7	nbisL1-mrna-17068, nbisL1-mrna-17069, nbisL1-mrna-19573 ... nbisL1-mrna-21211, nbisL1-mrna-21219, nbisL1-mrna-21579, nbisL1-mrna-22621
Rhizophoraceae	Rhizophora mangle	7	nbisL1-mrna-1539, nbisL1-mrna-15783, nbisL1-mrna-17841 ... nbisL1-mrna-17879, nbisL1-mrna-18274, nbisL1-mrna-8559, nbisL1-mrna-8560
Salicaceae	Populus euphratica	12	populus_peu02668, populus_peu02724, populus_peu03568 ... populus_peu06727, populus_peu09061, populus_peu13644, populus_peu20624, populus_peu22704, populus_peu22805, populus_peu22807, populus_peu22810, populus_peu37395
Solanaceae	Lycium barbarum	10	gene-LOC132601226, gene-LOC132601860, gene-LOC132602437 ... gene-LOC132611636, gene-LOC132612662, gene-LOC132612663, gene-LOC132613375, gene-LOC132614290, gene-LOC132631537, gene-LOC132639787
Solanaceae	Solanum chilense	12	SOLCI000142000, SOLCI000386000, SOLCI001192300 ... SOLCI001847100, SOLCI002112700, SOLCI002200600, SOLCI003379000, SOLCI004072200, SOLCI004927700, SOLCI005434600, SOLCI005434800, SOLCI005438000
Solanaceae	Solanum pennellii	14	gene-LOC107001479, gene-LOC107003575, gene-LOC107005919 ... gene-LOC107010167, gene-LOC107013661, gene-LOC107016184, gene-LOC107016394, gene-LOC107020650, gene-LOC107024788, gene-LOC107027431, gene-LOC114074895, gene-LOC114075206, gene-LOC114076806, gene-LOC114076849
Tamaricaceae	Reaumuria soongarica	4	STRG.13275_chr07_+, STRG.14088_chr05_+, STRG.29349_chr10_+ ... gene_16626
Tamaricaceae	Tamarix chinensis	4	TC03G0705, TC07G1738, TC07G2446, TC09G1459
Zosteraceae	Zostera marina	4	Zosma03g28460.v3.1, Zosma05g21600.v3.1, Zosma05g21680.v3.1 ... Zosma06g11530.v3.1