Basic Information
Locus ID:
gene.Thate04g05130
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Ubiquitin fusion degradation protein 1 homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 32978762 | 33007038 | + | gene.Thate04g05130 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.06 | 35,382.84 Da | 54.61 | 69.34 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 15 | 186 | 1.7E-78 | IPR004854 |
| Gene3D | G3DSA:2.40.40.50 | - | 8 | 110 | 1.2E-44 | IPR042299 |
| Gene3D | G3DSA:3.10.330.10 | - | 111 | 184 | 1.3E-33 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 230 | 275 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 196 | 318 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 287 | 301 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21270.1 | ubiquitin fusion degradation 1. | 0 |
| RefSeq | XP_015570969.1 | ubiquitin fusion degradation protein 1 homolog [Ricinus communis] | 0 |
| Q55BK0 | Ubiquitin fusion degradation protein 1 homolog OS=Dictyostelium discoideum OX=44689 GN=ufd1 PE=3 SV=1 | 0 | |
| TrEMBL | A0A6P5H176 | ubiquitin fusion degradation protein 1 homolog OS=Ananas comosus OX=4615 GN=LOC109728646 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology