Basic Information
Locus ID:
gene.Thate04g04900
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 31768614 | 31858652 | + | gene.Thate04g04900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.35 | 135,811.94 Da | 49.86 | 77.20 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 1023 | 1179 | 8.19188E-54 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 495 | 818 | 1.1166E-91 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 515 | 895 | 7.3E-68 | IPR000330 |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 934 | 970 | 4.7E-5 | IPR018957 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1071 | 1169 | 8.0E-16 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 826 | 1227 | 1.7E-54 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 484 | 818 | 5.32E-44 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 931 | 979 | 5.89E-11 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 833 | 1229 | 2.9E-64 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 919 | 1015 | 5.7E-11 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 466 | 557 | 4.6E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 704 | 819 | 1.9E-29 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 585 | 699 | 1.9E-10 | IPR038718 |
| SMART | SM00487 | ultradead3 | 491 | 795 | 2.9E-30 | IPR014001 |
| SMART | SM00490 | helicmild6 | 1086 | 1169 | 7.5E-19 | IPR001650 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1064 | 1222 | 14.218582 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 510 | 780 | 12.602787 | IPR014001 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 934 | 973 | 10.733671 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 949 | 958 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 683 | 709 | - | - |
Gene Ontology
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61140.3 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_002263027.3 | PREDICTED: helicase-like transcription factor CHR28 isoform X1 [Vitis vinifera] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | F6GZ87 | Helicase-like transcription factor CHR28 OS=Vitis vinifera OX=29760 GN=VIT_10s0116g00700 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology