Basic Information
Locus ID:
gene.Thate04g03360
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Short Name:
CS1
Description:
Chorismate synthase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 19468199 | 19485664 | - | gene.Thate04g03360 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.23 | 53,870.27 Da | 68.51 | 57.06 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 426 | 466 | 3.51321E-28 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 425 | 471 | 7.6E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 426 | 472 | 7.95E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 411 | 476 | 3.6E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 427 | 465 | 2.9E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 427 | 466 | 11.353297 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 95 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 63 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 111 | 130 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 352 | 371 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 351 | 371 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 69 | 95 | - | - |
KEGG Pathway
Pathway:
ko00400 (Phenylalanine, tyrosine and tryptophan biosynthesis)
map00400 (Phenylalanine, tyrosine and tryptophan biosynthesis)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
ko01230 (Biosynthesis of amino acids)
map01230 (Biosynthesis of amino acids)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09770.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_020089224.1 | probable E3 ubiquitin-protein ligase LOG2 [Ananas comosus] | 0 |
| Q9S752 | Probable E3 ubiquitin-protein ligase LOG2 OS=Arabidopsis thaliana OX=3702 GN=LOG2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6P5F078 | RING-type E3 ubiquitin transferase OS=Ananas comosus OX=4615 GN=LOC109710854 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology