Basic Information
Locus ID:
gene.Thate04g01140
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Belongs to the histone deacetylase family. HD Type 1 subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 6734402 | 6735763 | - | gene.Thate04g01140 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.23 | 50,698.53 Da | 44.41 | 79.78 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09991 | HDAC_classI | 29 | 340 | 0.0 | - |
| Pfam | PF00850 | Histone deacetylase domain | 43 | 338 | 7.0E-85 | IPR023801 |
| SUPERFAMILY | SSF52768 | Arginase/deacetylase | 24 | 393 | 1.49E-123 | IPR023696 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 22 | 401 | 2.1E-137 | IPR037138 |
| PIRSF | PIRSF037913 | HDAC_I_euk | 12 | 452 | 1.8E-204 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 236 | 249 | 3.4E-53 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 45 | 62 | 3.4E-53 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 177 | 193 | 3.4E-53 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 115 | 132 | 3.4E-53 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 190 | 205 | 7.9E-24 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 158 | 181 | 7.9E-24 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 275 | 285 | 7.9E-24 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 253 | 271 | 3.4E-53 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 136 | 156 | 3.4E-53 | IPR003084 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 431 | 453 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G63110.1 | histone deacetylase 6. RPD3-like histone deacetylase. HDA6 mutations specifically increase the expression of auxin-responsive transgenes, suggesting a role in transgene silencing. | 0 |
| RefSeq | XP_008791163.2 | histone deacetylase 6 isoform X3 [Phoenix dactylifera] | 0 |
| Q9FML2 | Histone deacetylase 6 OS=Arabidopsis thaliana OX=3702 GN=HDA6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7I8KXC2 | Histone deacetylase OS=Spirodela intermedia OX=51605 GN=SI8410_09013009 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology