Basic Information
Locus ID:
gene.Thate04g00910
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 5770792 | 5786701 | + | gene.Thate04g00910 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.02 | 39,188.30 Da | 64.07 | 80.69 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 150 | 195 | 4.09151E-25 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 152 | 193 | 3.1E-9 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 148 | 206 | 6.03E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 111 | 206 | 7.6E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 152 | 193 | 3.2E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 152 | 194 | 12.917115 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 167 | 176 | - | IPR017907 |
| Coils | Coil | Coil | 35 | 69 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G27470.1 | RING membrane-anchor 3. Encodes a RING finger E3 ubiquitin ligase. | 0 |
| RefSeq | XP_010918493.1 | E3 ubiquitin-protein ligase RMA1H1 [Elaeis guineensis] | 0 |
| Q8GUK7 | E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana OX=3702 GN=RMA3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9NX13 | RING-type E3 ubiquitin transferase OS=Zostera marina OX=29655 GN=ZOSMA_53G00720 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology