Basic Information
Locus ID:
gene.Thate03g26030
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
A domain family that is part of the cupin metalloenzyme superfamily.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 542304050 | 542347765 | - | gene.Thate03g26030 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.01 | 172,537.27 Da | 49.64 | 63.29 | -0.98 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08879 | WRC | 13 | 53 | 1.9E-10 | IPR014977 |
| Pfam | PF02373 | JmjC domain, hydroxylase | 1361 | 1457 | 2.0E-14 | IPR003347 |
| SUPERFAMILY | SSF51197 | Clavaminate synthase-like | 1359 | 1496 | 3.02E-22 | - |
| SUPERFAMILY | SSF51197 | Clavaminate synthase-like | 691 | 867 | 2.88E-8 | - |
| Gene3D | G3DSA:2.60.120.650 | Cupin | 1314 | 1482 | 8.9E-65 | - |
| Gene3D | G3DSA:2.60.120.650 | Cupin | 677 | 962 | 7.1E-84 | - |
| SMART | SM00558 | cupin_9 | 794 | 1474 | 1.0E-69 | IPR003347 |
| ProSiteProfiles | PS51667 | WRC domain profile. | 12 | 56 | 16.340324 | IPR014977 |
| ProSiteProfiles | PS51184 | JmjC domain profile. | 813 | 1474 | 20.954939 | IPR003347 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 377 | 422 | 8.786275 | IPR001841 |
| PRINTS | PR00929 | AT-hook-like domain signature | 279 | 290 | 7.0E-5 | IPR017956 |
| PRINTS | PR00929 | AT-hook-like domain signature | 343 | 353 | 7.0E-5 | IPR017956 |
| PRINTS | PR00929 | AT-hook-like domain signature | 159 | 169 | 7.0E-5 | IPR017956 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 926 | 960 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1141 | 1155 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 926 | 966 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1188 | 1216 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 168 | 204 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 351 | 368 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 217 | 281 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1140 | 1216 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 90 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 141 | 368 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 31 | 108 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 290 | 339 | - | - |
| Coils | Coil | Coil | 208 | 228 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G62310.1 | transcription factor jumonji (jmjC) domain-containing protein. | 0 |
| RefSeq | XP_010940350.1 | lysine-specific demethylase JMJ25 [Elaeis guineensis] | 0 |
| C0SV12 | Lysine-specific demethylase JMJ29 OS=Arabidopsis thaliana OX=3702 GN=JMJ29 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9SB97 | lysine-specific demethylase JMJ25 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105058958 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology