halophFGD

Basic Information

Locus ID: gene.Thate03g24680

Species & Taxonomic ID: Thalassia testudinum & 55497

Genome Assembly: GCA_037157565.1

Description: RING-H2 finger protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Chr03	536265209	536266070	+	gene.Thate03g24680

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
4.46	21,194.02 Da	50.71	88.18	0.28

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF12678	RING-H2 zinc finger domain	110	165	1.7E-9	IPR024766
SUPERFAMILY	SSF57850	RING/U-box	121	174	2.94E-16	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	98	174	8.4E-16	IPR013083
SMART	SM00184	ring_2	122	165	1.0E-4	IPR001841
ProSiteProfiles	PS50089	Zinc finger RING-type profile.	122	165	10.984472	IPR001841
MobiDBLite	mobidb-lite	consensus disorder prediction	177	198	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	178	198	-	-

Gene Ontology

Molecular Function:

GO:0008270 (zinc ion binding)

KEGG Pathway

KO Term:

K10664 (E3 ubiquitin-protein ligase ATL6/9/15/31/42/55 [EC:2.3.2.27])

Best hit

Source	Best Hit ID	Description
TAIR	AT4G40070.1	RING/U-box superfamily protein.
RefSeq	XP_002453609.2	E3 ubiquitin-protein ligase EL5 [Sorghum bicolor]
Swiss-Prot	Q8W571	RING-H2 finger protein ATL32 OS=Arabidopsis thaliana OX=3702 GN=ATL32 PE=2 SV=3
TrEMBL	A0A0D9VE96	RING-type domain-containing protein OS=Leersia perrieri OX=77586 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate03g24680
Poaceae	Zoysia japonica	1	nbis-gene-57008