halophFGD

Basic Information

Locus ID: gene.Thate03g24390

Species & Taxonomic ID: Thalassia testudinum & 55497

Genome Assembly: GCA_037157565.1

Description: eukaryotic translation initiation factor

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Chr03	534210470	534243918	-	gene.Thate03g24390

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.33	143,629.69 Da	49.28	78.98	-0.73

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd16266	IF2_aeIF5B_IV	1173	1268	4.40985E-32	-
CDD	cd03703	aeIF5B_II	934	1043	2.87115E-52	-
CDD	cd01887	IF2_eIF5B	713	923	1.18364E-81	-
Pfam	PF03144	Elongation factor Tu domain 2	949	1026	5.3E-10	IPR004161
Pfam	PF00009	Elongation factor Tu GTP binding domain	714	921	1.4E-33	IPR000795
Pfam	PF11987	Translation-initiation factor 2	1049	1151	3.8E-23	IPR023115
SUPERFAMILY	SSF52156	Initiation factor IF2/eIF5b, domain 3	1035	1165	1.16E-35	IPR036925
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	709	1001	4.62E-64	IPR027417
SUPERFAMILY	SSF50447	Translation proteins	1169	1301	2.95E-32	IPR009000
Gene3D	G3DSA:2.40.30.10	Translation factors	933	1051	6.5E-52	-
Gene3D	G3DSA:3.40.50.10050	-	1052	1158	5.1E-39	IPR036925
Gene3D	G3DSA:2.40.30.10	Translation factors	1165	1301	4.1E-59	-
Gene3D	G3DSA:3.40.50.300	-	705	932	3.0E-71	IPR027417
TIGRFAM	TIGR00231	small_GTP: small GTP-binding protein domain	715	839	8.2E-17	IPR005225
ProSiteProfiles	PS51722	Translational (tr)-type guanine nucleotide-binding (G) domain profile.	710	926	45.630882	IPR000795
PRINTS	PR00315	GTP-binding elongation factor signature	714	727	1.0E-7	IPR000795
PRINTS	PR00315	GTP-binding elongation factor signature	778	788	1.0E-7	IPR000795
PRINTS	PR00315	GTP-binding elongation factor signature	794	805	1.0E-7	IPR000795
PRINTS	PR00315	GTP-binding elongation factor signature	830	839	1.0E-7	IPR000795
MobiDBLite	mobidb-lite	consensus disorder prediction	386	490	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	167	181	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	212	231	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	242	324	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	669	695	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	614	639	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	202	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	25	56	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	352	490	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	513	705	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	94	112	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	532	556	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	128	157	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	279	303	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	582	601	-	-
Coils	Coil	Coil	1147	1167	-	-
Coils	Coil	Coil	370	401	-	-
Coils	Coil	Coil	412	479	-	-

Gene Ontology

Molecular Function:

GO:0003924 (GTPase activity) GO:0005525 (GTP binding)

KEGG Pathway

KO Term:

K02703 (photosystem II P680 reaction center D1 protein [EC:1.10.3.9])

Pathway:

ko00195 (Photosynthesis) map00195 (Photosynthesis) ko01100 (Metabolic pathways) map01100 (Metabolic pathways)

Module:

M00161 (Photosystem II)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G76810.1	eukaryotic translation initiation factor 2 (eIF-2) family protein.
RefSeq	XP_010925041.1	LOW QUALITY PROTEIN: eukaryotic translation initiation factor 5B-like [Elaeis guineensis]
Swiss-Prot	G0S8G9	Eukaryotic translation initiation factor 5B OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) OX=759272 GN=CTHT_0029840 PE=1 SV=2
TrEMBL	A0A8K0ITU2	Eukaryotic translation initiation factor 5B OS=Cocos nucifera OX=13894 GN=COCNU_14G000450 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg6070
Aizoaceae	Mesembryanthemum crystallinum	2	gene_15301, gene_245
Amaranthaceae	Atriplex hortensis	3	Ah003421, Ah018262, Ah018421
Amaranthaceae	Beta vulgaris	3	BVRB_3g050350, BVRB_7g173810, BVRB_9g202210
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg14893, Sbi_jg28723, Sbi_jg2920, Sbi_jg31007 ... Sbi_jg31009, Sbi_jg55702
Amaranthaceae	Salicornia europaea	7	Seu_jg22981, Seu_jg22982, Seu_jg26226, Seu_jg6833 ... Seu_jg6939, Seu_jg6940, Seu_jg6959
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00004375, GOSA_00004376, GOSA_00017916
Amaranthaceae	Suaeda glauca	2	Sgl01135, Sgl06220
Amaranthaceae	Chenopodium album	5	gene:ENSEOMG00000003077, gene:ENSEOMG00000021883 ... gene:ENSEOMG00000022784, gene:ENSEOMG00000031997, gene:ENSEOMG00000044257
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.3AG0006900, CQ.Regalona.r1.3AG0006930
Anacardiaceae	Pistacia vera	1	pistato.v30037970
Apiaceae	Apium graveolens	6	Ag3G00748, Ag3G00749, Ag3G01911, Ag4G02445, Ag4G02446 ... Ag7G00454
Arecaceae	Cocos nucifera	2	COCNU_14G000450, scaffold033353G000040
Arecaceae	Phoenix dactylifera	2	gene-LOC103720357, gene-LOC103721040
Asparagaceae	Asparagus officinalis	1	AsparagusV1_04.1583.V1.1
Asteraceae	Flaveria trinervia	3	Ftri10G06402, Ftri12G27292, Ftri9G10744
Brassicaceae	Arabidopsis thaliana	5	AT1G21160.1, AT1G76720.1, AT1G76810.1, AT1G76820.1 ... AT2G27700.2
Brassicaceae	Eutrema salsugineum	4	Thhalv10006634m.g.v1.0, Thhalv10018018m.g.v1.0 ... Thhalv10021382m.g.v1.0, Thhalv10022147m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp5g31970.v2.2
Brassicaceae	Brassica nigra	4	BniB02g016020.2N, BniB02g016030.2N, BniB03g009000.2N ... BniB05g073240.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq08G1632
Casuarinaceae	Casuarina glauca	1	Cgl08G1673
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno07g04590
Dunaliellaceae	Dunaliella salina	1	Dusal.0041s00031.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate03g24390
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG06.718
Plantaginaceae	Plantago ovata	8	Pov_00011481, Pov_00011596, Pov_00011597, Pov_00011598 ... Pov_00012015, Pov_00015017, Pov_00015018, Pov_00023099
Plumbaginaceae	Limonium bicolor	2	Lb2G10385, Lb3G16650
Poaceae	Echinochloa crus-galli	6	AH05.3560, BH05.1205, BH05.3558, CH01.2697, CH05.1503 ... CH05.3712
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_5AG0360980, gene-QOZ80_5AG0391570 ... gene-QOZ80_5BG0409430, gene-QOZ80_5BG0439620
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.1HG0094710.1
Poaceae	Lolium multiflorum	2	gene-QYE76_015006, gene-QYE76_042706
Poaceae	Oryza coarctata	3	Oco02G013470, Oco09G018380, Oco10G018310
Poaceae	Oryza sativa	4	LOC_Os01g40150.1, LOC_Os01g40170.1, LOC_Os05g51500.1 ... LOC_Os12g31880.1
Poaceae	Paspalum vaginatum	3	gene-BS78_08G078500, gene-BS78_08G078600 ... gene-BS78_09G258100
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0505892, Pt_Chr0703558
Poaceae	Sporobolus alterniflorus	11	Chr01G016380, Chr04G015670, Chr04G024780, Chr06G016320 ... Chr06G016340, Chr06G016350, Chr07G023610, Chr0G020300, Chr0G030010, Chr12G020410, Chr18G015880
Poaceae	Thinopyrum elongatum	4	Tel1E01G740900, Tel1E01G741100, Tel1E01G742100 ... Tel7E01G813100
Poaceae	Triticum dicoccoides	4	gene_TRIDC1AG064300, gene_TRIDC1BG073510 ... gene_TRIDC7AG066570, gene_TRIDC7BG060760
Poaceae	Triticum aestivum	6	TraesCS1A02G438600.2, TraesCS1B02G472500.1 ... TraesCS1D02G446400.1, TraesCS1D02G446900.2, TraesCS7A02G479800.2, TraesCS7B02G382100.1
Poaceae	Zea mays	1	Zm00001eb345280_P001
Poaceae	Zoysia japonica	2	nbis-gene-13527, nbis-gene-48615
Poaceae	Zoysia macrostachya	2	Zma_g25096, Zma_g27484
Portulacaceae	Portulaca oleracea	5	evm.TU.LG01.629, evm.TU.LG03.129, evm.TU.LG03.17 ... evm.TU.LG04.140, evm.TU.LG04.143
Posidoniaceae	Posidonia oceanica	1	gene.Posoc08g14760
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_8_RagTag.1614
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-19623, nbisL1-mrna-8731
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-402, nbisL1-mrna-8952
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-15078, nbisL1-mrna-15079, nbisL1-mrna-8068 ... nbisL1-mrna-8069
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000018l.50, evm.TU.utg000023l.36
Rhizophoraceae	Kandelia obovata	1	Maker00003101
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-19721, nbisL1-mrna-9392
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-23779
Salicaceae	Populus euphratica	5	populus_peu00417, populus_peu18706, populus_peu18723 ... populus_peu29630, populus_peu29631
Solanaceae	Lycium barbarum	1	gene-LOC132636476
Solanaceae	Solanum chilense	2	SOLCI001496400, SOLCI003795700
Solanaceae	Solanum pennellii	4	gene-LOC107014299, gene-LOC107014401, gene-LOC107017076 ... gene-LOC107023346
Tamaricaceae	Reaumuria soongarica	2	STRG.5392_chr02_+, gene_17626
Tamaricaceae	Tamarix chinensis	1	TC03G1943
Zosteraceae	Zostera marina	4	Zosma01g35560.v3.1, Zosma04g20870.v3.1, Zosma277g00050.v3.1 ... Zosma277g00060.v3.1