Basic Information
Locus ID:
gene.Thate03g23050
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
JAB/MPN domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 526722545 | 526761381 | - | gene.Thate03g23050 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.76 | 34,880.06 Da | 51.52 | 88.58 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 138 | 314 | 1.55894E-93 | IPR044098 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 136 | 244 | 6.5E-18 | IPR000555 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 141 | 270 | 7.98E-21 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 123 | 315 | 5.8E-67 | - |
| SMART | SM00232 | pad1_6 | 140 | 268 | 9.8E-16 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 141 | 269 | 27.730919 | IPR037518 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10600.1 | associated molecule with the SH3 domain of STAM 2. | 0 |
| RefSeq | XP_026663789.2 | AMSH-like ubiquitin thioesterase 2 isoform X7 [Phoenix dactylifera] | 0 |
| Q6NKP9 | AMSH-like ubiquitin thioesterase 2 OS=Arabidopsis thaliana OX=3702 GN=AMSH2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8B8J941 | AMSH-like ubiquitin thioesterase 2 isoform X7 OS=Phoenix dactylifera OX=42345 GN=LOC103715835 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology