Basic Information
Locus ID:
gene.Thate03g22960
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 526241929 | 526247366 | - | gene.Thate03g22960 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.45 | 100,554.65 Da | 72.12 | 55.93 | -1.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 376 | 505 | 2.01902E-61 | - |
| CDD | cd00201 | WW | 18 | 48 | 3.5147E-4 | IPR001202 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 181 | 351 | 4.5E-48 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 388 | 496 | 7.1E-33 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 229 | 511 | 1.34E-73 | IPR027417 |
| SUPERFAMILY | SSF51045 | WW domain | 12 | 50 | 2.74E-8 | IPR036020 |
| Gene3D | G3DSA:3.40.50.300 | - | 366 | 537 | 7.0E-58 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 8 | 59 | 2.0E-5 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 132 | 365 | 2.1E-87 | IPR027417 |
| SMART | SM00490 | helicmild6 | 416 | 496 | 1.7E-33 | IPR001650 |
| SMART | SM00456 | ww_5 | 16 | 49 | 3.6E-6 | IPR001202 |
| SMART | SM00487 | ultradead3 | 176 | 379 | 4.5E-65 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 157 | 185 | 11.68037 | IPR014014 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 15 | 49 | 11.230801 | IPR001202 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 188 | 362 | 31.270079 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 391 | 535 | 25.402313 | IPR001650 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 21 | 47 | - | IPR001202 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 308 | 316 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 755 | 783 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 68 | 135 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 647 | 731 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 527 | 905 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 68 | 83 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 111 | 135 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 577 | 619 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 868 | 883 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 84 | 100 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 823 | 837 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01540.1 | DEAD box RNA helicase 1. RNA HELICASE DRH1 | 0 |
| RefSeq | XP_002273908.2 | PREDICTED: ATP-dependent RNA helicase-like protein DB10 isoform X1 [Vitis vinifera] | 0 |
| Q8H136 | DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana OX=3702 GN=RH14 PE=1 SV=2 | 0 | |
| TrEMBL | F6HUY4 | ATP-dependent RNA helicase-like protein DB10 OS=Vitis vinifera OX=29760 GN=VIT_14s0066g01020 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology