Basic Information
Locus ID:
gene.Thate03g22540
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
ribosomal protein S4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 523715932 | 523729681 | + | gene.Thate03g22540 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.01 | 25,637.52 Da | 46.16 | 102.68 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00165 | S4 | 92 | 148 | 3.3428E-14 | IPR002942 |
| Pfam | PF00240 | Ubiquitin family | 154 | 223 | 1.9E-13 | IPR000626 |
| Pfam | PF01479 | S4 domain | 92 | 138 | 1.9E-13 | IPR002942 |
| SUPERFAMILY | SSF55174 | Alpha-L RNA-binding motif | 33 | 167 | 2.39E-23 | - |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 149 | 223 | 1.82E-17 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 148 | 224 | 7.4E-21 | - |
| Gene3D | G3DSA:3.10.290.10 | - | 89 | 147 | 7.6E-8 | IPR036986 |
| SMART | SM00363 | s4_6 | 91 | 153 | 5.4E-13 | IPR002942 |
| SMART | SM00213 | ubq_7 | 152 | 224 | 5.7E-13 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 152 | 209 | 16.711828 | IPR000626 |
| ProSiteProfiles | PS50889 | S4 RNA-binding domain profile. | 91 | 169 | 13.624695 | - |
| ProSitePatterns | PS00632 | Ribosomal protein S4 signature. | 89 | 113 | - | IPR018079 |
| PRINTS | PR00348 | Ubiquitin signature | 162 | 182 | 1.9E-8 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 183 | 203 | 1.9E-8 | IPR019956 |
| Coils | Coil | Coil | 29 | 49 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G07734.1 | Alpha-L RNA-binding motif/Ribosomal protein S4 family protein. | 0 |
| RefSeq | YP_010274267.1 | ribosomal protein S4 (mitochondrion) [Calystegia soldanella] | 0 |
| Q31708 | Small ribosomal subunit protein uS4m OS=Arabidopsis thaliana OX=3702 GN=RPS4 PE=1 SV=3 | 0 | |
| TrEMBL | A0A0K9NVI8 | Ribosomal protein S4, mitochondrial OS=Zostera marina OX=29655 GN=ZOSMA_58G00860 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah003022 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg60950 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg1339, Seu_jg37 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000015172, gene:ENSEOMG00000015731 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4BG0021210, CQ.Regalona.r1.8BG0012300 |
| Arecaceae | Phoenix dactylifera | 2 | gene-KEH32_p22, gene-LOC120106306 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G07734.1, ATMG00290.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10023100m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g25550.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniS02598g060.2N |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G0500 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno05g04970, gene.Cymno08g03410 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate03g22540, gene.Thate05g29300 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00011838 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.4HG0353840.1 ... |
| Poaceae | Oryza coarctata | 3 | Ocoptg000098lG000010, Ocoptg000344lG000010 ... |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_K264900 |
| Poaceae | Thinopyrum elongatum | 7 | Tel1E01G484100, Tel1E01G562300, Tel1E01G718000 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS1B02G262700.1.cds1, TraesCS2B02G283500.1.cds1 ... |
| Poaceae | Zea mays | 9 | Zm00001eb384400_P001, Zm00001eb436030_P001 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g29130, gene.Posoc05g15480 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-16525, nbisL1-mrna-31542, nbisL1-mrna-31548 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-22939 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-22325 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-25351, nbisL1-mrna-25459 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132637792 |
| Solanaceae | Solanum chilense | 1 | SOLCI005421900 |
| Tamaricaceae | Reaumuria soongarica | 7 | gene_10482, gene_15844, gene_1671, gene_2313, gene_2314 ... |
| Zosteraceae | Zostera marina | 2 | Zosma04g01160.v3.1, Zosma04g17580.v3.1 |