Basic Information
Locus ID:
gene.Thate03g22010
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Oligouridylate-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 520200647 | 520233281 | - | gene.Thate03g22010 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.45 | 44,702.35 Da | 47.16 | 67.17 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12354 | RRM3_TIA1_like | 247 | 319 | 8.10155E-36 | - |
| CDD | cd12352 | RRM1_TIA1_like | 41 | 111 | 1.23987E-34 | - |
| CDD | cd12619 | RRM2_PUB1 | 125 | 199 | 1.09743E-48 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 126 | 196 | 3.5E-19 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 249 | 314 | 6.8E-12 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 41 | 107 | 2.5E-16 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 23 | 117 | 6.72E-24 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 235 | 325 | 3.09E-21 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 118 | 205 | 1.25E-27 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 223 | 325 | 2.6E-22 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 121 | 217 | 2.3E-27 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 2 | 120 | 2.5E-22 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 248 | 317 | 1.8E-13 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 40 | 109 | 2.9E-18 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 125 | 198 | 3.9E-25 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 124 | 202 | 18.10334 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 247 | 321 | 14.896925 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 39 | 113 | 16.107859 | IPR000504 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_008801437.2 | oligouridylate-binding protein 1-like isoform X1 [Phoenix dactylifera] | 0 |
| Q6YZW2 | RNA-binding protein 208 OS=Oryza sativa subsp. japonica OX=39947 GN=RBP-208 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1U7ZTF9 | oligouridylate-binding protein 1-like OS=Nelumbo nucifera OX=4432 GN=LOC104593859 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology