Basic Information
Locus ID:
gene.Thate03g21200
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
IBR domain, a half RING-finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 514547250 | 514593528 | + | gene.Thate03g21200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.34 | 66,585.61 Da | 54.94 | 60.65 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 135 | 185 | 4.93743E-15 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 204 | 266 | 3.4E-15 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 283 | 331 | 1.3E-9 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 204 | 273 | 7.34E-13 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 132 | 213 | 4.59E-19 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 285 | 333 | 1.87E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 129 | 219 | 4.1E-17 | IPR013083 |
| Gene3D | G3DSA:1.20.120.1750 | - | 262 | 517 | 2.4E-85 | - |
| SMART | SM00647 | ibrneu5 | 204 | 266 | 4.7E-22 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 279 | 340 | 0.052 | IPR002867 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 135 | 179 | 9.509172 | IPR001841 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 131 | 344 | 49.918106 | IPR044066 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 566 | 585 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 19 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 521 | 558 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 29 | 45 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 46 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 522 | 537 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_010912800.1 | probable E3 ubiquitin-protein ligase ARI8 isoform X2 [Elaeis guineensis] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9QNL4 | RBR-type E3 ubiquitin transferase OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105038632 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology