Basic Information
Locus ID:
gene.Thate03g20930
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
glycerophosphodiester phosphodiesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 512050563 | 512084273 | - | gene.Thate03g20930 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.86 | 81,447.06 Da | 47.64 | 91.39 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 349 | 648 | 2.13404E-144 | - |
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 42 | 331 | 7.18179E-148 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 353 | 644 | 6.9E-37 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 348 | 649 | 4.97E-44 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 41 | 331 | 1.54E-38 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 40 | 332 | 4.9E-32 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 347 | 648 | 3.4E-48 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 348 | 649 | 33.184475 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 42 | 332 | 30.269361 | IPR030395 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G66970.1 | SHV3-like 2. | 0 |
| RefSeq | XP_010928867.1 | glycerophosphodiester phosphodiesterase GDPDL3 [Elaeis guineensis] | 0 |
| Q7Y208 | Glycerophosphodiester phosphodiesterase GDPDL1 OS=Arabidopsis thaliana OX=3702 GN=GDPDL1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9PJI7 | glycerophosphodiester phosphodiesterase OS=Zostera marina OX=29655 GN=ZOSMA_221G00170 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology