Basic Information
Locus ID:
gene.Thate03g20770
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
High mobility group B protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 510493826 | 510522103 | - | gene.Thate03g20770 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.31 | 36,331.07 Da | 43.97 | 69.79 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01390 | HMGB-UBF_HMG-box | 251 | 312 | 3.76415E-15 | - |
| CDD | cd16872 | ARID_HMGB9-like | 55 | 140 | 7.38551E-48 | - |
| Pfam | PF00505 | HMG (high mobility group) box | 251 | 316 | 1.2E-6 | IPR009071 |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 59 | 140 | 2.8E-16 | IPR001606 |
| SUPERFAMILY | SSF101447 | Formin homology 2 domain (FH2 domain) | 13 | 23 | 1.28E-5 | - |
| SUPERFAMILY | SSF47095 | HMG-box | 239 | 318 | 1.44E-17 | IPR036910 |
| SUPERFAMILY | SSF46774 | ARID-like | 50 | 151 | 8.5E-28 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 235 | 327 | 3.1E-16 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 45 | 156 | 6.1E-26 | IPR036431 |
| SMART | SM00398 | hmgende2 | 250 | 317 | 2.8E-9 | IPR009071 |
| SMART | SM01014 | ARID_2 | 50 | 140 | 1.6E-26 | - |
| SMART | SM00501 | bright_3 | 54 | 145 | 4.7E-25 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 251 | 316 | 10.509138 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 53 | 144 | 24.978895 | IPR001606 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 7 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 31 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13350.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_034679105.1 | high mobility group B protein 10 isoform X2 [Vitis riparia] | 0 |
| Q9LTT3 | High mobility group B protein 10 OS=Arabidopsis thaliana OX=3702 GN=HMGB10 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9P8Z9 | AT-rich interactive domain-containing protein OS=Zostera marina OX=29655 GN=ZOSMA_31G00740 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology