Basic Information
Locus ID:
gene.Thate03g20270
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 502617856 | 502668320 | - | gene.Thate03g20270 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.59 | 44,228.23 Da | 57.71 | 81.14 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 133 | 184 | 4.70385E-21 | - |
| Pfam | PF12906 | RING-variant domain | 133 | 183 | 6.1E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 129 | 188 | 9.71E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 117 | 196 | 2.5E-17 | IPR013083 |
| SMART | SM00744 | ringv_2 | 132 | 184 | 7.4E-17 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 125 | 190 | 21.605728 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 95 | 113 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 52 | 74 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 123 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11020.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_038987232.1 | uncharacterized protein LOC103721143 isoform X1 [Phoenix dactylifera] | 0 |
| TrEMBL | A0A7I8L1G6 | RING-CH-type domain-containing protein OS=Spirodela intermedia OX=51605 GN=SI8410_09013813 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology