Basic Information
Locus ID:
gene.Thate03g17860
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
U2 snRNP auxiliary factor large subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 412619262 | 412620979 | - | gene.Thate03g17860 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.37 | 8,155.45 Da | 35.16 | 68.93 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 22 | 66 | 1.3E-6 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 23 | 74 | 2.17E-11 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 47 | 68 | 1.4E-11 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 23 | 46 | 1.4E-11 | IPR012677 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G60900.1 | U2 snRNP auxilliary factor, large subunit, splicing factor. | 0 |
| RefSeq | XP_031250816.1 | splicing factor U2af large subunit B-like isoform X8 [Pistacia vera] | 0 |
| Q8L716 | Splicing factor U2af large subunit B OS=Arabidopsis thaliana OX=3702 GN=U2AF65B PE=1 SV=2 | 0 | |
| TrEMBL | A0A199UVN0 | Splicing factor U2af large subunit B (Fragment) OS=Ananas comosus OX=4615 GN=ACMD2_08111 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g03870.v2.2 |
| Hydrocharitaceae | Thalassia testudinum | 5 | gene.Thate02g16090, gene.Thate02g27300, gene.Thate03g17860 ... |