Basic Information
Locus ID:
gene.Thate03g14990
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 299836894 | 299880971 | - | gene.Thate03g14990 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.48 | 35,692.04 Da | 40.73 | 64.86 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03829 | Sina | 169 | 297 | 4.96993E-69 | - |
| CDD | cd16571 | RING-HC_SIAHs | 53 | 91 | 1.346E-14 | - |
| Pfam | PF03145 | Seven in absentia protein family | 97 | 296 | 1.9E-81 | IPR018121 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 108 | 300 | 4.64E-49 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 49 | 95 | 1.77E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 103 | 162 | 3.0E-17 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 49 | 97 | 2.8E-6 | IPR013083 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 163 | 296 | 1.6E-39 | IPR008974 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 55 | 91 | 9.464913 | IPR001841 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 108 | 168 | 14.330566 | IPR013010 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61790.1 | Protein with RING/U-box and TRAF-like domains. | 0 |
| RefSeq | XP_010266545.1 | PREDICTED: E3 ubiquitin-protein ligase SINAT5 isoform X1 [Nelumbo nucifera] | 0 |
| Q8S3N1 | E3 ubiquitin-protein ligase SINAT5 OS=Arabidopsis thaliana OX=3702 GN=SINAT5 PE=1 SV=2 | 0 | |
| TrEMBL | A0A1U8AHD0 | RING-type E3 ubiquitin transferase OS=Nelumbo nucifera OX=4432 GN=LOC104604027 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology