Basic Information
Locus ID:
gene.Thate03g13230
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Histone-binding protein RBBP4 or subunit C of CAF1 complex
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 239341963 | 239381562 | - | gene.Thate03g13230 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.27 | 11,649.19 Da | 45.60 | 89.90 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12265 | Histone-binding protein RBBP4 or subunit C of CAF1 complex | 19 | 84 | 3.5E-16 | IPR022052 |
| Gene3D | G3DSA:2.130.10.10 | - | 11 | 100 | 1.2E-18 | IPR015943 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G19520.1 | Transducin family protein / WD-40 repeat family protein. Controls flowering. | 0 |
| RefSeq | XP_023872900.1 | WD-40 repeat-containing protein MSI4-like [Quercus suber] | 0 |
| O22607 | WD-40 repeat-containing protein MSI4 OS=Arabidopsis thaliana OX=3702 GN=MSI4 PE=1 SV=3 | 0 | |
| TrEMBL | A0A0K9PGN0 | WD-40 repeat-containing protein MSI4 OS=Zostera marina OX=29655 GN=ZOSMA_24G01360 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg27259 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g13230 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-12721, nbis-gene-56840, nbis-gene-57397 |