Basic Information
Locus ID:
gene.Thate03g12060
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
SPA1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 201697309 | 201860607 | + | gene.Thate03g12060 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.12 | 88,551.61 Da | 52.93 | 78.22 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 566 | 598 | 4.9E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 647 | 682 | 0.0013 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 472 | 784 | 2.11E-52 | IPR036322 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 40 | 242 | 8.44E-16 | IPR011009 |
| Gene3D | G3DSA:2.130.10.10 | - | 451 | 787 | 1.0E-117 | IPR015943 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 40 | 246 | 7.2E-23 | - |
| SMART | SM00320 | WD40_4 | 746 | 785 | 6.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 644 | 682 | 2.4E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 691 | 730 | 1.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 601 | 640 | 0.0065 | IPR001680 |
| SMART | SM00320 | WD40_4 | 467 | 505 | 2.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 558 | 598 | 3.8E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 516 | 555 | 36.0 | IPR001680 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 237 | 10.506522 | IPR000719 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 565 | 598 | 9.651964 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 651 | 684 | 10.495596 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 565 | 607 | 12.446706 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 651 | 691 | 12.680634 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 669 | 683 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 669 | 683 | 3.6E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 542 | 556 | 3.6E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 585 | 599 | 3.6E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 107 | 131 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 40 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 17 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15354.3 | - | 0 |
| RefSeq | XP_042519543.1 | protein SPA1-RELATED 4-like isoform X1 [Macadamia integrifolia] | 0 |
| Q9LJR3 | Protein SPA1-RELATED 3 OS=Arabidopsis thaliana OX=3702 GN=SPA3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1D1YT62 | Protein SPA1-RELATED 3 OS=Anthurium amnicola OX=1678845 GN=SPA3_0 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology