Basic Information
Locus ID:
gene.Thate03g11440
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 192333771 | 192448502 | - | gene.Thate03g11440 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.23 | 50,627.26 Da | 32.95 | 73.31 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 298 | 332 | 3.5E-4 | IPR001680 |
| Pfam | PF18044 | CCCH-type zinc finger | 142 | 163 | 9.6E-7 | IPR041367 |
| Pfam | PF00400 | WD domain, G-beta repeat | 337 | 371 | 0.003 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 175 | 211 | 7.1E-5 | IPR001680 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 140 | 166 | 5.23E-6 | IPR036855 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 162 | 463 | 1.46E-45 | IPR036322 |
| Gene3D | G3DSA:3.30.1370.210 | - | 13 | 77 | 1.5E-5 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 172 | 257 | 1.4E-8 | IPR015943 |
| Gene3D | G3DSA:2.30.30.1190 | - | 98 | 171 | 1.8E-5 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 258 | 465 | 1.2E-30 | IPR015943 |
| SMART | SM00356 | c3hfinal6 | 35 | 60 | 0.71 | IPR000571 |
| SMART | SM00320 | WD40_4 | 172 | 211 | 2.6E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 251 | 288 | 8.4 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 138 | 165 | 3.2E-5 | IPR000571 |
| SMART | SM00320 | WD40_4 | 335 | 372 | 4.7E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 422 | 462 | 220.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 295 | 332 | 4.9E-5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 179 | 220 | 13.315579 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 179 | 211 | 10.284687 | - |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 138 | 166 | 14.370583 | IPR000571 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 35 | 61 | 11.27218 | IPR000571 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 302 | 341 | 12.513543 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 302 | 335 | 9.599237 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 319 | 333 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 359 | 373 | 2.9E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 198 | 212 | 2.9E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 319 | 333 | 2.9E-7 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 62 | 82 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 21 | 37 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 113 | 132 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 62 | 80 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 37 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_010933903.1 | zinc finger CCCH domain-containing protein 17 [Elaeis guineensis] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9PZ18 | Zinc finger CCCH domain-containing protein 17 OS=Zostera marina OX=29655 GN=ZOSMA_133G00030 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology