Basic Information
Locus ID:
gene.Thate03g11000
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 174899060 | 174959065 | + | gene.Thate03g11000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.72 | 87,878.88 Da | 45.70 | 92.37 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 66 | 215 | 4.19452E-37 | - |
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 720 | 761 | 2.58281E-22 | - |
| Pfam | PF00069 | Protein kinase domain | 436 | 682 | 6.0E-44 | IPR000719 |
| Pfam | PF04564 | U-box domain | 716 | 787 | 6.3E-20 | IPR003613 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 76 | 186 | 8.37E-5 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 712 | 786 | 1.06E-24 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 410 | 691 | 2.29E-68 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 418 | 505 | 6.6E-27 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 714 | 788 | 3.4E-28 | IPR013083 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 506 | 702 | 6.1E-47 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 56 | 187 | 8.5E-8 | IPR014729 |
| SMART | SM00504 | Ubox_2 | 719 | 782 | 1.1E-26 | IPR003613 |
| SMART | SM00220 | serkin_6 | 433 | 694 | 1.9E-33 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 433 | 695 | 34.16684 | IPR000719 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 715 | 788 | 37.569454 | IPR003613 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 439 | 460 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 551 | 563 | - | IPR008271 |
| Coils | Coil | Coil | 372 | 406 | - | - |
| Coils | Coil | Coil | 286 | 343 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_010940488.1 | U-box domain-containing protein 33 [Elaeis guineensis] | 0 |
| Q8GUH1 | U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8K0IIB7 | U-box domain-containing protein 33 OS=Cocos nucifera OX=13894 GN=COCNU_08G010440 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology