Basic Information
Locus ID:
gene.Thate03g06810
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
transcriptional corepressor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 50724861 | 50802805 | - | gene.Thate03g06810 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.84 | 106,238.70 Da | 53.81 | 71.38 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 691 | 976 | 4.24996E-61 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 861 | 893 | 8.7E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 696 | 727 | 0.16 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 740 | 769 | 1.8E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 945 | 976 | 0.068 | IPR001680 |
| Pfam | PF08513 | LisH | 192 | 218 | 4.4E-7 | IPR006594 |
| Pfam | PF00400 | WD domain, G-beta repeat | 775 | 813 | 8.2E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 691 | 976 | 7.33E-59 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 824 | 976 | 2.0E-28 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 663 | 823 | 2.2E-30 | IPR015943 |
| SMART | SM00320 | WD40_4 | 937 | 976 | 0.0016 | IPR001680 |
| SMART | SM00320 | WD40_4 | 855 | 893 | 3.7E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 730 | 769 | 6.6E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 773 | 813 | 1.8E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 896 | 935 | 1.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 816 | 852 | 94.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 688 | 727 | 5.6E-5 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 780 | 816 | 8.65015 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 737 | 769 | 9.757418 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 695 | 736 | 9.305395 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 190 | 222 | 9.010734 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 862 | 902 | 9.205141 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 737 | 769 | 11.678087 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 944 | 976 | 13.415834 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 780 | 822 | 10.475033 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 944 | 976 | 12.446495 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 116 | 130 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 133 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 505 | 602 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 514 | 594 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 74 | 98 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 47 | - | - |
| Coils | Coil | Coil | 543 | 570 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_042517296.1 | transcriptional corepressor LEUNIG_HOMOLOG-like isoform X1 [Macadamia integrifolia] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A1U7Z588 | transcriptional corepressor LEUNIG_HOMOLOG-like isoform X1 OS=Nelumbo nucifera OX=4432 GN=LOC104589376 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology