Basic Information
Locus ID:
gene.Thate03g06300
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 44919559 | 45013598 | + | gene.Thate03g06300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.63 | 96,853.10 Da | 49.34 | 75.75 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02440 | AdoMet_MTases | 606 | 672 | 3.85094E-5 | - |
| CDD | cd00590 | RRM_SF | 194 | 260 | 2.22181E-7 | - |
| Pfam | PF05958 | tRNA (Uracil-5-)-methyltransferase | 572 | 663 | 8.1E-7 | IPR010280 |
| Pfam | PF05958 | tRNA (Uracil-5-)-methyltransferase | 766 | 817 | 2.3E-8 | IPR010280 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 197 | 258 | 1.1E-5 | IPR000504 |
| Pfam | PF00642 | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 102 | 128 | 3.0E-6 | IPR000571 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 195 | 270 | 1.54E-7 | IPR035979 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 311 | 881 | 5.54E-46 | IPR029063 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 97 | 133 | 1.37E-5 | IPR036855 |
| Gene3D | G3DSA:3.30.70.330 | - | 194 | 264 | 6.9E-7 | IPR012677 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 545 | 880 | 7.1E-63 | - |
| Gene3D | G3DSA:4.10.1000.10 | - | 93 | 134 | 1.8E-9 | - |
| SMART | SM00356 | c3hfinal6 | 100 | 128 | 0.0015 | IPR000571 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 100 | 129 | 13.948072 | IPR000571 |
| ProSiteProfiles | PS51687 | SAM-dependent methyltransferase RNA m(5)U-type domain profile. | 308 | 881 | 45.267921 | IPR010280 |
| ProSitePatterns | PS01230 | RNA methyltransferase trmA family signature 1. | 777 | 809 | - | IPR030390 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 133 | 169 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 133 | 165 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 55 | 87 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 104 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 88 | 104 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 675 | 702 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G28450.1 | zinc finger (CCCH-type) family protein. | 0 |
| RefSeq | XP_008791527.1 | zinc finger CCCH domain-containing protein 24 [Phoenix dactylifera] | 0 |
| Q8L7S3 | Zinc finger CCCH domain-containing protein 24 OS=Arabidopsis thaliana OX=3702 GN=At2g28450 PE=1 SV=1 | 0 | |
| TrEMBL | A0A443NSK8 | Zinc finger CCCH domain-containing protein 24 isoform X1 OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_01018300 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg35872 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_20859 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah037774 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g208060 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg41873, Sbi_jg48254 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg27595 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00019765 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl22058, Sgl27336, Sgl78570, Sgl81054 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000016164, gene:ENSEOMG00000016348 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.9AG0004940, CQ.Regalona.r1.9BG0017370 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30058730 |
| Apiaceae | Apium graveolens | 4 | Ag2G00954, AgUnG00514, AgUnG01597, AgUnG01598 |
| Arecaceae | Cocos nucifera | 1 | COCNU_07G000100 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103708402 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.21.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G31703 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G28450.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016347m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g11270.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g017450.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1718 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1758 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno15g04020 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g06300 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.923 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00014650 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G32392 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.31, BH09.106, CH09.76 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0328510, gene-QOZ80_4BG0360510 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0100410.2 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_038082, gene-QYE76_038083 |
| Poaceae | Oryza coarctata | 1 | Oco08G000150 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g01480.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G004200 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0305932, Pt_Chr0306000 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr23G019170, Chr25G016790, Chr26G000780, Chr30G014600 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G096800 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC2BG004730 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G039200.1, TraesCS2B02G051800.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb089580_P001, Zm00001eb418880_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-46845 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g19214 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.2197, evm.TU.LG23.431 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g00040 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_13_RagTag.713 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-30333 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-19756 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16094 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000015l.413 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015772 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4332 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-15083 |
| Salicaceae | Populus euphratica | 1 | populus_peu35491 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132600428 |
| Solanaceae | Solanum chilense | 1 | SOLCI004152300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107004810 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_14615 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G2749 |
| Zosteraceae | Zostera marina | 1 | Zosma01g38900.v3.1 |