Basic Information
Locus ID:
gene.Thate03g05370
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Polysaccharide lyase family 4, domain III
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 37139170 | 37145541 | + | gene.Thate03g05370 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.47 | 73,351.68 Da | 33.79 | 75.60 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10320 | RGL4_N | 9 | 301 | 9.93416E-77 | - |
| CDD | cd10317 | RGL4_C | 446 | 634 | 8.43744E-54 | - |
| CDD | cd10316 | RGL4_M | 335 | 434 | 2.50345E-32 | IPR029413 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 9 | 203 | 3.2E-92 | IPR010325 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 444 | 633 | 1.8E-49 | IPR029411 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 358 | 430 | 5.8E-23 | IPR029413 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 441 | 634 | 2.69E-51 | IPR008979 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 332 | 432 | 1.45E-8 | IPR013784 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 17 | 293 | 1.29E-10 | IPR011013 |
| Gene3D | G3DSA:2.60.40.1120 | - | 332 | 431 | 5.0E-7 | - |
| Gene3D | G3DSA:2.70.98.10 | - | 9 | 312 | 7.1E-13 | IPR014718 |
| Gene3D | G3DSA:2.60.120.260 | - | 442 | 634 | 9.7E-20 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G09890.4 | - | 0 |
| RefSeq | XP_020113076.1 | probable rhamnogalacturonate lyase B isoform X1 [Ananas comosus] | 0 |
| TrEMBL | A0A199URL7 | rhamnogalacturonan endolyase OS=Ananas comosus OX=4615 GN=LOC109727379 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology