Basic Information
Locus ID:
gene.Thate03g05160
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
DA1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 32604580 | 32666657 | - | gene.Thate03g05160 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.70 | 78,557.55 Da | 54.56 | 64.10 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 151 | 203 | 9.57426E-30 | - |
| Pfam | PF00412 | LIM domain | 151 | 205 | 2.9E-10 | IPR001781 |
| Pfam | PF12315 | Protein DA1 | 300 | 496 | 6.9E-93 | IPR022087 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 178 | 232 | 2.34E-8 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 144 | 176 | 1.32E-7 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 146 | 210 | 1.8E-14 | - |
| SMART | SM00132 | lim_4 | 150 | 202 | 9.7E-15 | IPR001781 |
| SMART | SM00726 | uim | 41 | 60 | 26.0 | IPR003903 |
| SMART | SM00726 | uim | 111 | 130 | 18.0 | IPR003903 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 149 | 209 | 12.2662 | IPR001781 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 111 | 124 | 9.304029 | IPR003903 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 151 | 185 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 52 | 115 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 439 | 456 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 52 | 92 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 654 | 707 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 680 | 707 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 439 | 461 | - | - |
| Coils | Coil | Coil | 51 | 80 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36860.1 | LIM domain-containing protein. | 0 |
| RefSeq | XP_009406379.1 | PREDICTED: protein DA1-related 1 [Musa acuminata subsp. malaccensis] | 0 |
| Q8W4F0 | Protein DA1-related 1 OS=Arabidopsis thaliana OX=3702 GN=DAR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A804JLY9 | (wild Malaysian banana) hypothetical protein OS=Musa acuminata subsp. malaccensis OX=214687 GN=103989301 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology