Basic Information
Locus ID:
gene.Thate03g05070
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 31496962 | 31498419 | - | gene.Thate03g05070 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.21 | 52,104.12 Da | 51.99 | 102.35 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 80 | 122 | 4.44536E-23 | - |
| Pfam | PF04564 | U-box domain | 76 | 145 | 3.4E-16 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 72 | 144 | 8.83E-24 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 253 | 470 | 3.09E-15 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 288 | 476 | 1.1E-13 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 60 | 152 | 2.3E-24 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 79 | 142 | 1.9E-27 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 75 | 149 | 28.122246 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G49810.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_008790249.1 | U-box domain-containing protein 30-like [Phoenix dactylifera] | 0 |
| Q10PI9 | U-box domain-containing protein 75 OS=Oryza sativa subsp. japonica OX=39947 GN=TUD1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B7C2M7 | RING-type E3 ubiquitin transferase OS=Phoenix dactylifera OX=42345 GN=LOC103707510 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene.Thate03g05070.