Basic Information
Locus ID:
gene.Thate03g04470
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 26146455 | 26163599 | - | gene.Thate03g04470 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.00 | 147,097.38 Da | 47.40 | 79.06 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02659 | peptidase_C19C | 323 | 651 | 1.30895E-168 | - |
| CDD | cd00121 | MATH | 182 | 305 | 2.1412E-38 | IPR002083 |
| Pfam | PF00917 | MATH domain | 189 | 307 | 1.9E-18 | IPR002083 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 1012 | 1222 | 1.4E-56 | IPR029346 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 325 | 646 | 5.1E-46 | IPR001394 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 750 | 1002 | 6.9E-77 | IPR024729 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 320 | 676 | 6.87E-97 | IPR038765 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 178 | 314 | 1.32E-40 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 810 | 927 | 5.0E-44 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 322 | 650 | 1.5E-89 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 179 | 321 | 3.8E-51 | IPR008974 |
| Gene3D | G3DSA:3.10.20.90 | - | 928 | 1025 | 1.8E-27 | - |
| SMART | SM00061 | math_3 | 182 | 286 | 2.0E-20 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 180 | 305 | 38.570854 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 325 | 649 | 40.103268 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 565 | 582 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 326 | 341 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 24 | 48 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 53 | - | - |
| Coils | Coil | Coil | 665 | 685 | - | - |
| Coils | Coil | Coil | 23 | 43 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.2 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_038985461.1 | ubiquitin carboxyl-terminal hydrolase 12 isoform X4 [Phoenix dactylifera] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8B9AFG5 | ubiquitinyl hydrolase 1 OS=Phoenix dactylifera OX=42345 GN=LOC103707271 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology