Basic Information
Locus ID:
gene.Thate03g04280
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
PHD - plant homeodomain finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 24961005 | 25017161 | - | gene.Thate03g04280 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.31 | 55,226.28 Da | 53.00 | 75.55 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07227 | PHD - plant homeodomain finger protein | 150 | 284 | 8.1E-30 | IPR032881 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 15 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
| Coils | Coil | Coil | 386 | 406 | - | - |
| Coils | Coil | Coil | 445 | 465 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05410.1 | Protein of unknown function (DUF1423). | 0 |
| RefSeq | XP_010932764.1 | uncharacterized protein LOC105053359 [Elaeis guineensis] | 0 |
| TrEMBL | A0A6I9S3K3 | uncharacterized protein LOC105053359 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105053359 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg11162 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_2550 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah029442 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg1303, Sbi_jg35264 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg3417 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003584 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl74109, Sgl77590 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000008043, gene:ENSEOMG00000038783 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0012980, CQ.Regalona.r1.7BG0014910 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30236630 |
| Apiaceae | Apium graveolens | 4 | Ag1G01861, Ag8G01581, Ag8G01582, Ag9G01758 |
| Arecaceae | Cocos nucifera | 4 | COCNU_01G017830, COCNU_01G017840, COCNU_03G001020 ... |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103712345, gene-LOC103716965 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.1896.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri7G29245 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G05410.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10007544m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g04290.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB05g063950.2N, BniB06g045140.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1361 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1451 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno09g05250 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g04280 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-5428, nbisL1-mrna-5429 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.1026 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00026201, Pov_00031594 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G24575, Lb4G24628 |
| Poaceae | Echinochloa crus-galli | 3 | BH01.751, CH01.748, Contig309.101 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_3BG0261630 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.5HG0510160.1, HORVU.MOREX.r3.5HG0510200.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_061930 |
| Poaceae | Oryza coarctata | 2 | Oco05G023450, Oco06G024350 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g53590.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G082700 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0107137 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr01G005340, Chr12G037750 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G613500 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC5BG060410 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G385300.3, TraesCS5B02G390300.3 ... |
| Poaceae | Zea mays | 1 | Zm00001eb057100_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-15051 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g490 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG06.1758, evm.TU.LG11.1110 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g12660 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.433 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-1482 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6501 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6164 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000019l.960, evm.TU.utg000019l.961 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012945 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6359 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2134 |
| Salicaceae | Populus euphratica | 2 | populus_peu21393, populus_peu37322 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132610305, gene-LOC132642185 |
| Solanaceae | Solanum chilense | 15 | SOLCI000617900, SOLCI000789300, SOLCI002254800 ... |
| Solanaceae | Solanum pennellii | 9 | gene-LOC107022368, gene-LOC107022370, gene-LOC107023014 ... |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G0750 |
| Zosteraceae | Zostera marina | 2 | Zosma01g28380.v3.1, Zosma02g20870.v3.1 |