Basic Information
Locus ID:
gene.Thate03g01240
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
E3 ubiquitin ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 5587704 | 5611712 | + | gene.Thate03g01240 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.11 | 140,625.05 Da | 48.55 | 76.79 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 46 | 172 | 1.08042E-33 | - |
| CDD | cd12108 | Hr-like | 300 | 427 | 1.04926E-16 | - |
| CDD | cd16464 | RING-H2_Pirh2 | 1126 | 1169 | 6.34575E-18 | - |
| CDD | cd12108 | Hr-like | 659 | 816 | 2.21978E-27 | - |
| Pfam | PF14599 | Zinc-ribbon | 1174 | 1231 | 1.8E-23 | IPR039512 |
| Pfam | PF13639 | Ring finger domain | 1126 | 1168 | 4.8E-7 | IPR001841 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 658 | 817 | 3.3E-7 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 52 | 174 | 5.2E-12 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 296 | 429 | 1.3E-6 | IPR012312 |
| Pfam | PF05495 | CHY zinc finger | 998 | 1073 | 3.4E-18 | IPR008913 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 991 | 1054 | 5.75E-16 | IPR037274 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1126 | 1172 | 5.14E-8 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1064 | 1119 | 5.1E-15 | IPR037275 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1122 | 1171 | 1.1E-9 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 1198 | 1238 | 3.0E-16 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 653 | 882 | 3.9E-24 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 298 | 446 | 2.3E-19 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 41 | 192 | 9.4E-32 | - |
| SMART | SM00184 | ring_2 | 1127 | 1168 | 1.7E-5 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 991 | 1060 | 25.734354 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1063 | 1126 | 29.678455 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1127 | 1169 | 11.323791 | IPR001841 |
| Coils | Coil | Coil | 305 | 325 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_010906999.1 | zinc finger protein BRUTUS isoform X2 [Elaeis guineensis] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9QCL2 | zinc finger protein BRUTUS isoform X2 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105033777 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology