Basic Information
Locus ID:
gene.Thate02g40890
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 638041147 | 638046490 | + | gene.Thate02g40890 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.88 | 26,217.92 Da | 49.72 | 64.25 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 18 | 231 | 8.6E-85 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 120 | 221 | 7.85E-22 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 121 | 233 | 2.2E-44 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 123 | 222 | 25.819546 | IPR000270 |
| Coils | Coil | Coil | 46 | 73 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G04730.1 | indoleacetic acid-induced protein 16. early auxin-induced (IAA16) | 0 |
| RefSeq | XP_010936171.1 | auxin-responsive protein IAA30 [Elaeis guineensis] | 0 |
| O24407 | Auxin-responsive protein IAA16 OS=Arabidopsis thaliana OX=3702 GN=IAA16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A4S8IIW6 | Auxin-responsive protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb09t21920 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology