Basic Information
Locus ID:
gene.Thate02g38740
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Cupin
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 620698177 | 620706507 | - | gene.Thate02g38740 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.08 | 70,703.70 Da | 44.13 | 78.36 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02243 | cupin_11S_legumin_C | 484 | 639 | 3.36725E-75 | - |
| CDD | cd02242 | cupin_11S_legumin_N | 303 | 459 | 2.42893E-64 | - |
| Pfam | PF00190 | Cupin | 298 | 442 | 1.3E-28 | IPR006045 |
| Pfam | PF00012 | Hsp70 protein | 1 | 150 | 1.7E-45 | IPR013126 |
| Pfam | PF00190 | Cupin | 484 | 624 | 6.7E-25 | IPR006045 |
| SUPERFAMILY | SSF100934 | Heat shock protein 70kD (HSP70), C-terminal subdomain | 168 | 205 | 7.45E-5 | IPR029048 |
| SUPERFAMILY | SSF51182 | RmlC-like cupins | 300 | 631 | 7.49E-49 | IPR011051 |
| SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 27 | 151 | 3.63E-30 | IPR043129 |
| Gene3D | G3DSA:1.20.1270.10 | - | 157 | 210 | 2.0E-6 | IPR029048 |
| Gene3D | G3DSA:3.30.420.40 | - | 1 | 18 | 7.8E-49 | - |
| Gene3D | G3DSA:3.30.420.40 | - | 19 | 63 | 7.8E-49 | - |
| Gene3D | G3DSA:3.90.640.10 | Actin; Chain A, domain 4 | 64 | 149 | 7.8E-49 | - |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 481 | 642 | 3.0E-49 | IPR014710 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 290 | 480 | 4.2E-35 | IPR014710 |
| SMART | SM00835 | Cupin_1_3 | 289 | 443 | 5.0E-32 | IPR006045 |
| SMART | SM00835 | Cupin_1_3 | 485 | 625 | 3.8E-16 | IPR006045 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 602 | 619 | 8.8E-11 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 562 | 577 | 8.8E-11 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 544 | 560 | 8.8E-11 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 580 | 598 | 8.8E-11 | IPR006044 |
| Coils | Coil | Coil | 184 | 204 | - | - |
Gene Ontology
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G28680.1 | RmlC-like cupins superfamily protein. | 0 |
| RefSeq | XP_020086598.1 | glutelin type-B 5-like [Ananas comosus] | 0 |
| P11146 | Heat shock 70 kDa protein cognate 2 OS=Drosophila melanogaster OX=7227 GN=Hsc70-2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A1D1YYI9 | Glutelin type-A 2 (Fragment) OS=Anthurium amnicola OX=1678845 GN=GLUA2_0 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology