halophFGD

Basic Information

Locus ID: gene.Thate02g38470

Species & Taxonomic ID: Thalassia testudinum & 55497

Genome Assembly: GCA_037157565.1

Description: Polyamine oxidase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Chr02	618553370	618634869	-	gene.Thate02g38470

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.12	54,969.27 Da	36.48	81.06	-0.28

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF01593	Flavin containing amine oxidoreductase	36	469	1.9E-78	IPR002937
SUPERFAMILY	SSF54373	FAD-linked reductases, C-terminal domain	313	421	1.5E-31	-
SUPERFAMILY	SSF51905	FAD/NAD(P)-binding domain	26	476	9.71E-61	IPR036188
Gene3D	G3DSA:3.90.660.10	-	109	428	1.7E-161	-
Gene3D	G3DSA:3.50.50.60	-	29	469	1.7E-161	IPR036188
PRINTS	PR00757	Flavin-containing amine oxidase signature	204	226	2.3E-12	IPR001613
PRINTS	PR00757	Flavin-containing amine oxidase signature	422	444	2.3E-12	IPR001613
PRINTS	PR00757	Flavin-containing amine oxidase signature	453	470	2.3E-12	IPR001613
PRINTS	PR00757	Flavin-containing amine oxidase signature	28	47	2.3E-12	IPR001613

Gene Ontology

Molecular Function:

GO:0016491 (oxidoreductase activity)

KEGG Pathway

KO Term:

K13366 (polyamine oxidase [EC:1.5.3.14 1.5.3.16 1.5.3.-])

Pathway:

ko00330 (Arginine and proline metabolism) map00330 (Arginine and proline metabolism) ko00410 (beta-Alanine metabolism) map00410 (beta-Alanine metabolism) ko01100 (Metabolic pathways) map01100 (Metabolic pathways)

Reaction:

R01914 (Spermidine + Oxygen + H2O <=> 1,3-Diaminopropane + 4-Aminobutyraldehyde + Hydrogen peroxide) R09076 (Spermine + Oxygen + H2O <=> Spermidine + 3-Aminopropanal + Hydrogen peroxide)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G13700.1	polyamine oxidase 1. Encodes a protein with polyamine oxidase activity. The mRNA of this gene is only expressed in very low amounts in the organs where it was detected (light-grown plants).
RefSeq	XP_020103939.1	polyamine oxidase [Ananas comosus]
Swiss-Prot	O64411	Polyamine oxidase 1 OS=Zea mays OX=4577 GN=MPAO1 PE=1 SV=1
TrEMBL	A0A843X779	Amino_oxidase domain-containing protein OS=Colocasia esculenta OX=4460 GN=Taro_048126 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg130, jg1597, jg29019
Aizoaceae	Mesembryanthemum crystallinum	7	gene_13664, gene_13665, gene_13666, gene_13667, gene_13668 ... gene_13669, gene_16411
Amaranthaceae	Atriplex hortensis	3	Ah000626, Ah000627, Ah035698
Amaranthaceae	Beta vulgaris	2	BVRB_2g029100, BVRB_7g169320
Amaranthaceae	Salicornia bigelovii	7	Sbi_jg19617, Sbi_jg19618, Sbi_jg21743, Sbi_jg22078 ... Sbi_jg30513, Sbi_jg58732, Sbi_jg58733
Amaranthaceae	Salicornia europaea	3	Seu_jg16001, Seu_jg28601, Seu_jg28602
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00008621, GOSA_00014958
Amaranthaceae	Suaeda glauca	9	Sgl03316, Sgl03620, Sgl08388, Sgl08740, Sgl25134, Sgl30327 ... Sgl30330, Sgl63021, Sgl67648
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000005689, gene:ENSEOMG00000017063 ... gene:ENSEOMG00000019200, gene:ENSEOMG00000022927, gene:ENSEOMG00000022984, gene:ENSEOMG00000024720, gene:ENSEOMG00000024784, gene:ENSEOMG00000025088, gene:ENSEOMG00000049685
Amaranthaceae	Chenopodium quinoa	7	CQ.Regalona.r1.2AG0017140, CQ.Regalona.r1.2BG0018910 ... CQ.Regalona.r1.5AG0022870, CQ.Regalona.r1.5AG0022880, CQ.Regalona.r1.5AG0022890, CQ.Regalona.r1.5BG0024290, CQ.Regalona.r1.5BG0024300
Anacardiaceae	Pistacia vera	1	pistato.v30230040
Apiaceae	Apium graveolens	1	Ag1G00270
Arecaceae	Cocos nucifera	1	COCNU_05G004220
Arecaceae	Phoenix dactylifera	2	gene-LOC103713355, gene-LOC120108588
Asparagaceae	Asparagus officinalis	1	AsparagusV1_08.1060.V1.1
Asteraceae	Flaveria trinervia	3	Ftri11G22388, Ftri12G07201, FtriNA16082
Brassicaceae	Arabidopsis thaliana	1	AT5G13700.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10015601m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp6g30320.v2.2
Brassicaceae	Brassica nigra	1	BniB08g006460.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq05G0776
Casuarinaceae	Casuarina glauca	1	Cgl05G0784
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate02g38470, gene.Thate02g38480
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-2657
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG03.82
Plumbaginaceae	Limonium bicolor	5	Lb1G07774, Lb2G13332, Lb2G14041, Lb4G23621, Lb8G36436
Poaceae	Echinochloa crus-galli	8	AH01.4671, AH02.4470, BH01.2715, BH01.2717, BH02.4520 ... CH01.2894, CH02.4570, Contig181.94
Poaceae	Eleusine coracana subsp. coracana	5	gene-QOZ80_3AG0237150, gene-QOZ80_3AG0237160 ... gene-QOZ80_3BG0290920, gene-QOZ80_3BG0290930, gene-QOZ80_3BG0290960
Poaceae	Hordeum vulgare	5	HORVU.MOREX.r3.4HG0400080.1, HORVU.MOREX.r3.6HG0588230.1 ... HORVU.MOREX.r3.7HG0720280.1, HORVU.MOREX.r3.7HG0747940.1, HORVU.MOREX.r3.7HG0747970.1
Poaceae	Lolium multiflorum	8	gene-QYE76_018064, gene-QYE76_031821, gene-QYE76_035017 ... gene-QYE76_035018, gene-QYE76_039109, gene-QYE76_039111, gene-QYE76_039118, gene-QYE76_070176
Poaceae	Oryza coarctata	2	Oco05G005230, Oco20G003030
Poaceae	Oryza sativa	3	LOC_Os03g09810.1, LOC_Os09g20260.1, LOC_Os09g20284.1
Poaceae	Paspalum vaginatum	2	gene-BS78_01G243300, gene-BS78_01G449800
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0101502, Pt_Chr0202686, Pt_Chr0404446
Poaceae	Sporobolus alterniflorus	5	Chr01G026260, Chr01G026270, Chr12G013140, Chr13G017100 ... Chr13G017110
Poaceae	Thinopyrum elongatum	6	Tel4E01G448600, Tel4E01G622900, Tel4E01G623000 ... Tel7E01G643100, Tel7E01G939400, Tel7E01G939500
Poaceae	Triticum dicoccoides	9	gene_TRIDC4AG005420, gene_TRIDC4BG046130 ... gene_TRIDC4BG062740, gene_TRIDC5AG077610, gene_TRIDC6AG057920, gene_TRIDC7AG052900, gene_TRIDC7AG075070, gene_TRIDC7BG045450, gene_TRIDC7BG071730
Poaceae	Triticum aestivum	11	TraesCS4A02G039600.1, TraesCS4B02G265900.1 ... TraesCS4B02G385300.1, TraesCS4D02G265800.1, TraesCS5A02G549600.1, TraesCS7A02G378800.1, TraesCS7A02G539200.1, TraesCS7B02G280700.1, TraesCS7B02G461800.1, TraesCS7D02G375700.1, TraesCS7D02G524900.1
Poaceae	Zea mays	3	Zm00001eb008280_P001, Zm00001eb008300_P001 ... Zm00001eb413630_P001
Poaceae	Zoysia japonica	6	nbis-gene-27518, nbis-gene-27522, nbis-gene-27523 ... nbis-gene-4212, nbis-gene-4213, nbis-gene-56215
Poaceae	Zoysia macrostachya	2	Zma_g15938, Zma_g4239
Portulacaceae	Portulaca oleracea	3	evm.TU.LG02.113, evm.TU.LG02.926, evm.TU.LG09.1044
Posidoniaceae	Posidonia oceanica	3	gene.Posoc03g06180, gene.Posoc03g06190, gene.Posoc03g06200
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_11_RagTag.1009, evm.TU.Scaffold_4_RagTag.480 ... evm.TU.Scaffold_7_RagTag.309, evm.TU.Scaffold_8_RagTag.1424
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-19415, nbisL1-mrna-28881, nbisL1-mrna-9244
Rhizophoraceae	Ceriops tagal	5	nbisL1-mrna-10250, nbisL1-mrna-13779, nbisL1-mrna-515 ... nbisL1-mrna-567, nbisL1-mrna-9115
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-15242, nbisL1-mrna-1852, nbisL1-mrna-6986
Rhizophoraceae	Kandelia candel	5	add.evm.TU.utg000010l.38, add.evm.TU.utg000010l.39 ... evm.TU.utg000008l.310, evm.TU.utg000018l.172, evm.TU.utg000028l.191
Rhizophoraceae	Kandelia obovata	3	Maker00000165, Maker00002823, Maker00010686
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-14596, nbisL1-mrna-755, nbisL1-mrna-8844 ... nbisL1-mrna-9511
Rhizophoraceae	Rhizophora mangle	5	nbisL1-mrna-1470, nbisL1-mrna-18790, nbisL1-mrna-20171 ... nbisL1-mrna-8645, nbisL1-mrna-8646
Salicaceae	Populus euphratica	4	populus_peu01889, populus_peu28622, populus_peu30080 ... populus_peu35924
Solanaceae	Lycium barbarum	1	gene-LOC132644760
Solanaceae	Solanum chilense	1	SOLCI002047700
Solanaceae	Solanum pennellii	1	gene-LOC107009669
Tamaricaceae	Reaumuria soongarica	2	gene_11741, gene_15977
Tamaricaceae	Tamarix chinensis	1	TC05G1302