Basic Information
Locus ID:
gene.Thate02g36830
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
E3 ubiquitin ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 608185789 | 608288943 | + | gene.Thate02g36830 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.06 | 136,291.03 Da | 46.20 | 79.14 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 45 | 172 | 5.39529E-31 | - |
| CDD | cd12108 | Hr-like | 303 | 430 | 2.69657E-19 | - |
| CDD | cd16464 | RING-H2_Pirh2 | 1090 | 1133 | 5.57676E-16 | - |
| CDD | cd12108 | Hr-like | 621 | 778 | 1.86373E-23 | - |
| Pfam | PF05495 | CHY zinc finger | 962 | 1037 | 3.7E-18 | IPR008913 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 299 | 432 | 2.8E-6 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 45 | 174 | 1.3E-11 | IPR012312 |
| Pfam | PF13639 | Ring finger domain | 1090 | 1132 | 1.0E-8 | IPR001841 |
| Pfam | PF14599 | Zinc-ribbon | 1138 | 1195 | 6.6E-23 | IPR039512 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1028 | 1083 | 3.4E-15 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 954 | 1018 | 2.09E-16 | IPR037274 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1090 | 1140 | 2.92E-9 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 613 | 835 | 2.8E-19 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 1162 | 1202 | 1.2E-15 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 43 | 191 | 3.5E-29 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 301 | 449 | 1.5E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1084 | 1135 | 2.7E-11 | IPR013083 |
| SMART | SM00184 | ring_2 | 1091 | 1132 | 8.5E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1091 | 1133 | 11.751628 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 955 | 1024 | 25.688431 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1027 | 1090 | 29.707417 | IPR017921 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 13 | 31 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 33 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_010906999.1 | zinc finger protein BRUTUS isoform X2 [Elaeis guineensis] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9QCL2 | zinc finger protein BRUTUS isoform X2 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105033777 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology