Basic Information
Locus ID:
gene.Thate02g34230
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 590538846 | 590540030 | + | gene.Thate02g34230 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.75 | 36,437.38 Da | 57.42 | 87.54 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 117 | 160 | 7.21671E-19 | - |
| Pfam | PF13639 | Ring finger domain | 117 | 160 | 2.9E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 114 | 166 | 1.86E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 92 | 169 | 7.0E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 118 | 159 | 3.9E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 118 | 160 | 12.872856 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G20030.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_028802105.1 | putative RING-H2 finger protein ATL12 [Prosopis alba] | 0 |
| Q9SL78 | Putative RING-H2 finger protein ATL12 OS=Arabidopsis thaliana OX=3702 GN=ATL12 PE=3 SV=1 | 0 | |
| TrEMBL | A0A8K0N2L9 | E3 ubiquitin-protein ligase ATL42 OS=Cocos nucifera OX=13894 GN=COCNU_06G005340 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology