Basic Information
Locus ID:
gene.Thate02g34010
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
ribosomal protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 589562718 | 589582732 | + | gene.Thate02g34010 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.21 | 104,950.47 Da | 44.39 | 91.33 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00495 | Ribosomal_L25_TL5_CTC | 72 | 180 | 2.67576E-13 | IPR029751 |
| Pfam | PF13041 | PPR repeat family | 850 | 897 | 6.9E-10 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 641 | 664 | 0.16 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 567 | 617 | 4.1E-12 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 749 | 791 | 1.1E-12 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 676 | 721 | 1.3E-8 | IPR002885 |
| Pfam | PF01386 | Ribosomal L25p family | 73 | 179 | 2.6E-8 | IPR029751 |
| Pfam | PF13041 | PPR repeat family | 499 | 542 | 3.2E-8 | IPR002885 |
| Pfam | PF12854 | PPR repeat | 811 | 844 | 1.0E-5 | IPR002885 |
| Pfam | PF14693 | Ribosomal protein TL5, C-terminal domain | 188 | 271 | 1.8E-18 | IPR020057 |
| SUPERFAMILY | SSF50715 | Ribosomal protein L25-like | 77 | 270 | 1.06E-31 | IPR011035 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 401 | 562 | 1.2E-17 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 563 | 667 | 4.9E-27 | IPR011990 |
| Gene3D | G3DSA:2.170.120.20 | Ribosomal protein L25, beta domain | 185 | 276 | 9.9E-16 | IPR037121 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 769 | 952 | 1.6E-45 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 668 | 768 | 9.0E-25 | IPR011990 |
| Gene3D | G3DSA:2.40.240.10 | Ribosomal Protein L25; Chain P | 71 | 182 | 3.3E-8 | IPR020056 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 606 | 639 | 7.0E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 783 | 815 | 2.7E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 572 | 604 | 8.5E-8 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 749 | 781 | 2.7E-9 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 713 | 746 | 3.7E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 678 | 712 | 3.2E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 853 | 886 | 1.8E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 889 | 921 | 6.4E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 818 | 852 | 9.2E-4 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 495 | 529 | 8.593717 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 781 | 815 | 12.210946 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 568 | 603 | 10.325603 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 851 | 885 | 10.347525 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 816 | 850 | 9.909073 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 676 | 710 | 11.8273 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 604 | 638 | 11.334042 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 746 | 780 | 12.24383 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 530 | 564 | 8.79102 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 886 | 920 | 11.202506 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 711 | 745 | 10.150222 | IPR002885 |
| Hamap | MF_01334 | 50S ribosomal protein L25 [rplY]. | 71 | 272 | 19.123819 | IPR001021 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 16 | 51 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 340 | 365 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 16 | 52 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23620.1 | Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain. | 0 |
| RefSeq | XP_010275063.1 | PREDICTED: uncharacterized protein LOC104610237 [Nelumbo nucifera] | 0 |
| Q3SPM6 | Large ribosomal subunit protein bL25 OS=Nitrobacter winogradskyi (strain ATCC 25391 / DSM 10237 / CIP 104748 / NCIMB 11846 / Nb-255) OX=323098 GN=rplY PE=3 SV=1 | 0 | |
| TrEMBL | A0A0K9PMX1 | 50S ribosomal protein L25 OS=Zostera marina OX=29655 GN=ZOSMA_20G00500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg17464, jg40068, jg7671 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_14698 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah004537 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_5g099720, BVRB_6g134520 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg12971, Sbi_jg23953, Sbi_jg52896, Sbi_jg7780 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg12245, Seu_jg8964 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00001120, GOSA_00010263 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl33987, Sgl39382, Sgl52128, Sgl57399 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000001951, gene:ENSEOMG00000006475 ... |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.5AG0006630, CQ.Regalona.r1.5BG0006890 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30206780 |
| Apiaceae | Apium graveolens | 3 | Ag4G01063, Ag9G01262, Ag9G02771 |
| Arecaceae | Cocos nucifera | 3 | COCNU_06G000890, COCNU_06G017520, COCNU_14G010460 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103697155, gene-LOC103709224 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.2029.V1.1, AsparagusV1_07.2941.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri1G29466, Ftri9G29306 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT4G23620.2, AT5G66860.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10004830m.g.v1.0, Thhalv10026041m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g29800.v2.2, Sp7g21540.v2.2 |
| Brassicaceae | Brassica nigra | 7 | BniB03g013580.2N, BniB04g010650.2N, BniB05g013580.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1439 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1470 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno06g03010, gene.Cymno11g03240 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0369s00011.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g34010, gene.Thate05g15250 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-1514, nbisL1-mrna-6620 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG02.2189, evm.TU.LG02.2387, evm.TU.LG10.1470 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00029152, Pov_00029304 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G08463, Lb5G27718 |
| Poaceae | Echinochloa crus-galli | 7 | AH01.1152, AH02.2205, BH01.1534, BH02.2280, CH01.1502 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0022980, gene-QOZ80_1BG0073070 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_053546, gene-QYE76_063620 |
| Poaceae | Oryza coarctata | 4 | Oco01G013770, Oco02G013900, Oco05G018130, Oco06G018950 |
| Poaceae | Oryza sativa | 3 | LOC_Os01g41030.1, LOC_Os03g41612.1, LOC_Os05g18750.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G153400, gene-BS78_03G181500 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0104350, Pt_Chr0104386, Pt_Chr0603185, Pt_Chr0603209 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr02G016460, Chr03G010170, Chr05G017460, Chr08G010440 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G368200, Tel4E01G129300 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3AG031760, gene_TRIDC3BG036360 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS3A02G212900.1, TraesCS3B02G243200.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb219090_P002, Zm00001eb357570_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-20342, nbis-gene-29348, nbis-gene-33837 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g8154, Zma_g939 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG04.3317, evm.TU.LG05.598, evm.TU.LG16.281 ... |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc03g22880, gene.Posoc04g06300, gene.Posoc04g23880 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_16_RagTag.128, evm.TU.Scaffold_6_RagTag.1910 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17231 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-17123, nbisL1-mrna-4404 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-11877, nbisL1-mrna-20359 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000011l.1164, evm.TU.utg000022l.415 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00007694, Maker00014411 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-15530, nbisL1-mrna-3556 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-3182, nbisL1-mrna-6721 |
| Salicaceae | Populus euphratica | 4 | populus_peu03627, populus_peu14317, populus_peu14325 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132623217, gene-LOC132627001 |
| Solanaceae | Solanum chilense | 2 | SOLCI003512000, SOLCI006709400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107003157, gene-LOC107008924 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.5432_chr03_+, gene_1316 |
| Tamaricaceae | Tamarix chinensis | 2 | TC03G2377, TC04G1694 |
| Zosteraceae | Zostera marina | 2 | Zosma03g03060.v3.1, Zosma05g24970.v3.1 |