Basic Information
Locus ID:
gene.Thate02g32980
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 582503821 | 582532616 | + | gene.Thate02g32980 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.60 | 61,147.78 Da | 49.78 | 84.32 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 495 | 536 | 1.5E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 485 | 542 | 5.71E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 478 | 546 | 2.5E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 495 | 535 | 1.2E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 495 | 536 | 12.031935 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32600.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010925109.1 | E3 ubiquitin-protein ligase At1g63170 isoform X2 [Elaeis guineensis] | 0 |
| Q93Z92 | E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana OX=3702 GN=At4g11680 PE=2 SV=1 | 0 | |
| TrEMBL | A0A843USY3 | RING-type domain-containing protein OS=Colocasia esculenta OX=4460 GN=Taro_018121 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Hydrocharitaceae | Thalassia testudinum | 4 | gene.Thate02g12220, gene.Thate02g32980, gene.Thate03g02530 ... |