Basic Information
Locus ID:
gene.Thate02g30700
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Protein DA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 564540680 | 564573895 | + | gene.Thate02g30700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.15 | 72,075.93 Da | 57.91 | 73.75 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 278 | 330 | 1.85694E-27 | - |
| Pfam | PF12315 | Protein DA1 | 427 | 627 | 2.1E-92 | IPR022087 |
| Pfam | PF00412 | LIM domain | 278 | 332 | 2.5E-8 | IPR001781 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 304 | 359 | 1.59E-7 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 270 | 303 | 6.52E-7 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 272 | 337 | 2.8E-14 | - |
| SMART | SM00132 | lim_4 | 277 | 329 | 1.1E-11 | IPR001781 |
| SMART | SM00726 | uim | 238 | 257 | 0.18 | IPR003903 |
| SMART | SM00726 | uim | 207 | 226 | 0.13 | IPR003903 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 276 | 336 | 11.9296 | IPR001781 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 238 | 257 | 9.737266 | IPR003903 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 207 | 226 | 9.568785 | IPR003903 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 278 | 312 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 65 | 87 | - | - |
| Coils | Coil | Coil | 220 | 240 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36860.1 | LIM domain-containing protein. | 0 |
| RefSeq | XP_009406379.1 | PREDICTED: protein DA1-related 1 [Musa acuminata subsp. malaccensis] | 0 |
| Q8W4F0 | Protein DA1-related 1 OS=Arabidopsis thaliana OX=3702 GN=DAR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A804JLY9 | (wild Malaysian banana) hypothetical protein OS=Musa acuminata subsp. malaccensis OX=214687 GN=103989301 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology