Basic Information
Locus ID:
gene.Thate02g29410
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 553403222 | 553483047 | - | gene.Thate02g29410 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.57 | 99,459.56 Da | 49.42 | 81.39 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 711 | 875 | 3.14729E-62 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 283 | 874 | 3.0E-82 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 281 | 877 | 2.94E-109 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 682 | 884 | 9.0E-57 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 275 | 502 | 1.4E-64 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 283 | 877 | 56.883503 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 284 | 299 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 819 | 836 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22030.1 | ubiquitin-specific protease 8. | 0 |
| RefSeq | XP_008799885.2 | ubiquitin carboxyl-terminal hydrolase 8-like isoform X2 [Phoenix dactylifera] | 0 |
| Q9C585 | Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana OX=3702 GN=UBP8 PE=2 SV=2 | 0 | |
| TrEMBL | A0A1D1YCS6 | Ubiquitin carboxyl-terminal hydrolase (Fragment) OS=Anthurium amnicola OX=1678845 GN=UBP8_2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology